PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678318080
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 333aa    MW: 37056.9 Da    PI: 4.583
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678318080genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.4e-20125175155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+W+AeIrdp +   r r +lg+++taeeAa  +++a+ +l+g
  678318080 125 KKFRGVRQRP-WGKWAAEIRDPQQ---RVRLWLGTYDTAEEAAMVYDHAAIQLRG 175
                59********.**********944...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.67E-32125182No hitNo description
SMARTSM003803.0E-38126189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-30126183IPR001471AP2/ERF domain
PROSITE profilePS5103223.657126183IPR001471AP2/ERF domain
PfamPF008471.4E-12126175IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21126183IPR016177DNA-binding domain
PRINTSPR003673.5E-10127138IPR001471AP2/ERF domain
PRINTSPR003673.5E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVCCEGEVRI SEHVTRTTVF AGVHPPECQR KSHYSGGVVG ARTVRFSVTD ADATDSSSDE  60
EAEEDRLRVK RRRVRRYVNE VRIQSEDRSV GGCSEGAARS FPPAVTAQKR KKSVRVAQES  120
NLVNKKFRGV RQRPWGKWAA EIRDPQQRVR LWLGTYDTAE EAAMVYDHAA IQLRGPDALT  180
NFSNPHPETE KNSGYNSGDD SQTNVKSPSS VLRFISPETE PEPEPSTQTH QEFASPSTDA  240
ACPPVAFCPT ESLYNFSIFP PIEDLFADIE NPPLLPDFLD QTGFSDELFP LDISNEMLFT  300
SSNSDPGSTA LLWPADDFFQ DFNDVFGSDP LSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19125182159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-19125182462ATERF1
3gcc_A2e-19125182462ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774RVKRRRVR
26973KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMap678318080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080873.13e-99ethylene-responsive transcription factor CRF2
TrEMBLS8E6387e-96S8E638_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.A00686.1.p2e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-34cytokinin response factor 2