PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678317811
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 514aa    MW: 58189.7 Da    PI: 7.8501
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678317811genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.5e-1951106156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ ++++++q+++Le++++++++p++++r++L+++lgL+++q+k+WFqN+R+ +k
  678317811  51 KKQYHRHSAQQVQRLEDFYKECPHPDRNRRQQLSRELGLDTKQIKFWFQNKRTHMK 106
                688899**********************************************9988 PP
2START139.92.6e-442274463206
                HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
      START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                a  a++el+k+  ++ep+W k +    + + +d + +                   ++e +++sg vdm +a lve+lld++ +W+ ++a    kae ++
  678317811 227 AIGAMNELIKLLHVNEPVWIKARedgrQTLHRDSYDK------LfpkpnhfrsssARSESSKDSGEVDMSAAHLVEILLDVN-KWKDMFAtivtKAECVD 319
                6779*******************66654445555555......3344445899999**************************.***************** PP

                EECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.H CS
      START  84 vissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.h 178
                v+++g   g+lq  + ++  lsplv+ R+f ++Ry++ql+  +wv v  S d  +  + ++ + R+ +lpSg+lie++sng+skvtw+ehv ++++l  +
  678317811 320 VVDTGsvgGVLQMVYEKTHILSPLVApREFFIIRYCQQLKPNTWVMVNASYDFVKGAN-DAASGRSWKLPSGLLIEDLSNGKSKVTWIEHVQVDDKLStD 418
                *************************99******************************9.9**************************************99 PP

                HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 179 wllrslvksglaegaktwvatlqrqcek 206
                 l+r lv  g+a ga++w  tl+  ce+
  678317811 419 RLYRDLVFGGQAYGARRWITTLHMMCER 446
                ***********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-2036110IPR009057Homeodomain-like
SuperFamilySSF466896.27E-1943112IPR009057Homeodomain-like
PROSITE profilePS5007116.40648108IPR001356Homeobox domain
SMARTSM003892.1E-1650112IPR001356Homeobox domain
PfamPF000461.2E-1651106IPR001356Homeobox domain
CDDcd000863.03E-1651109No hitNo description
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PROSITE profilePS5084841.168216449IPR002913START domain
CDDcd088755.30E-83221445No hitNo description
SuperFamilySSF559613.71E-27222447No hitNo description
SMARTSM002346.2E-29225446IPR002913START domain
PfamPF018522.4E-37228446IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-9263412IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MHWCIHALGP TIQSFHTIYG CGSWMQKEMG VSNEGNGSGE EGSSSSSKRV KKQYHRHSAQ  60
QVQRLEDFYK ECPHPDRNRR QQLSRELGLD TKQIKFWFQN KRTHMKAQNE KADNDSLREE  120
NERIRCENLT LQHSLRNISC PVCNGPGIGD KERSHNLKTL RSENARLKEE HERAVSFISN  180
QMGNPNMLPG VDIPASILGQ GQEFPTEVMG KYMIHQHPGT SIVIERAIGA MNELIKLLHV  240
NEPVWIKARE DGRQTLHRDS YDKLFPKPNH FRSSSARSES SKDSGEVDMS AAHLVEILLD  300
VNKWKDMFAT IVTKAECVDV VDTGSVGGVL QMVYEKTHIL SPLVAPREFF IIRYCQQLKP  360
NTWVMVNASY DFVKGANDAA SGRSWKLPSG LLIEDLSNGK SKVTWIEHVQ VDDKLSTDRL  420
YRDLVFGGQA YGARRWITTL HMMCERLAFS MALTNTDVGG GMYSFXXXXX XXXFDSFVPD  480
TSLPWYTKEA TEYGVSGSSS HAGKLHNSED KRGS
Cis-element ? help Back to Top
SourceLink
PlantRegMap678317811
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085930.10.0homeobox-leucine zipper protein ROC8 isoform X1
RefseqXP_020551334.10.0homeobox-leucine zipper protein ROC8 isoform X2
TrEMBLA0A022QU910.0A0A022QU91_ERYGU; Uncharacterized protein
STRINGMigut.H02245.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10211732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-102homeodomain GLABROUS 11