PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678317746
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 320aa    MW: 35075.9 Da    PI: 6.441
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678317746genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.91.5e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+++++q+G g+W++ +++ g++R++k+c++rw +yl
        678317746 14 KGPWTPEEDEKLINYIQQHGHGSWRALPKHAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding57.23.8e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++++++++ +lG++ W++Ia +++ gRt++++k++w+++l
        678317746  67 RGKFSQEEEQIILNLHSLLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-28564IPR009057Homeodomain-like
PROSITE profilePS5129419.847961IPR017930Myb domain
SuperFamilySSF466892.27E-3211108IPR009057Homeodomain-like
SMARTSM007175.3E-171363IPR001005SANT/Myb domain
PfamPF002497.1E-191461IPR001005SANT/Myb domain
CDDcd001674.85E-141661No hitNo description
PROSITE profilePS5129427.80762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2865116IPR009057Homeodomain-like
SMARTSM007172.7E-1766114IPR001005SANT/Myb domain
PfamPF002498.0E-1767112IPR001005SANT/Myb domain
CDDcd001673.50E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRSPCCDDS GLKKGPWTPE EDEKLINYIQ QHGHGSWRAL PKHAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQIILN LHSLLGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLLQMG  120
IDPMTHQPRT DIFSSIPHLI ALASLKELIE NPHFDEHAKA MRLQAEAAQL ARLNTSLQSI  180
LQPAFPQQTF PDLATFSLLN TLKEASVLSH LDAGASPPPP PSDGFLYESM PLLHLPELQI  240
PCTLPQTGTG GPAECPAFEG VAQGEKSPQQ TPSPVPGSMV LAPVPLADSG AGVGDACSSS  300
SYGGSQMWSD LLDDHFFTEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-32121162105C-Myb DNA-Binding Domain
1msf_C4e-32121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678317746
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090566.11e-132transcription factor MYB39-like
SwissprotQ9S9Z28e-97MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2G9IAK41e-137A0A2G9IAK4_9LAMI; Transcription factor, Myb superfamily
STRINGPOPTR_0007s05360.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-95myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]