PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678316722 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 204aa MW: 23051.9 Da PI: 8.6555 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ +++ G g+W++ ++ g+ R++k+c++rw +yl 678316722 14 KGAWTKEEDERLIAYIRANGEGCWRSMPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.2 | 3.8e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+e +v+++ +lG++ W++Ia +++ gRt++++k++w+++ 678316722 67 RGNFTPQEEEAIVQLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.444 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.46E-28 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.68E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.58 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.27E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MGRSPCCDKA HSNKGAWTKE EDERLIAYIR ANGEGCWRSM PKAAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TPQEEEAIVQ LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSQG 120 IDPSTHRPIK ERESSQGADL NLDLRISPPR HHDDEGPARR NLNNTASFCA CTNTDDCSCN 180 RVISGYDFLG LNSNSEALSF SNLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-28 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678316722 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019231332.1 | 2e-92 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 1e-87 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | U3M3G8 | 9e-95 | U3M3G8_SALMI; R2R3 MYB transcription factor 39 | ||||
STRING | XP_009764613.1 | 2e-91 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-87 | myb domain protein 4 |
Publications ? help Back to Top | |||
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