PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678316722
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 204aa    MW: 23051.9 Da    PI: 8.6555
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678316722genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+ +++  G g+W++ ++  g+ R++k+c++rw +yl
        678316722 14 KGAWTKEEDERLIAYIRANGEGCWRSMPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding57.23.8e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e +v+++ +lG++ W++Ia +++ gRt++++k++w+++
        678316722  67 RGNFTPQEEEAIVQLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.444961IPR017930Myb domain
SMARTSM007176.1E-131363IPR001005SANT/Myb domain
SuperFamilySSF466891.46E-2813108IPR009057Homeodomain-like
PfamPF002491.2E-141461IPR001005SANT/Myb domain
CDDcd001673.68E-101661No hitNo description
PROSITE profilePS5129427.5862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2765116IPR009057Homeodomain-like
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002493.8E-1667111IPR001005SANT/Myb domain
CDDcd001675.27E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRSPCCDKA HSNKGAWTKE EDERLIAYIR ANGEGCWRSM PKAAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TPQEEEAIVQ LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSQG  120
IDPSTHRPIK ERESSQGADL NLDLRISPPR HHDDEGPARR NLNNTASFCA CTNTDDCSCN  180
RVISGYDFLG LNSNSEALSF SNLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678316722
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231332.12e-92PREDICTED: myb-related protein 308-like
SwissprotP813931e-87MYB08_ANTMA; Myb-related protein 308
TrEMBLU3M3G89e-95U3M3G8_SALMI; R2R3 MYB transcription factor 39
STRINGXP_009764613.12e-91(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-87myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]