PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678315764 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 223aa MW: 25126.4 Da PI: 10.0684 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed +l ++++ +G g W++++++ ++R++k+c++rw++yl 678315764 14 KGAWSKAEDAKLRNCIETYGEGKWHLVPSRAELNRCRKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.4e-14 | 69 | 111 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++E +ll+++ k+lG++ W++Ia +++ gRt++++k++w+++ 678315764 69 SFSEDEVDLLIRLQKLLGNR-WTLIAGRLP-GRTANDVKNFWNSH 111 79******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.352 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.45E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 21.994 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-13 | 68 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-20 | 69 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-10 | 69 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MEGRAVSVSL GVRKGAWSKA EDAKLRNCIE TYGEGKWHLV PSRAELNRCR KSCRLRWLNY 60 LRPNLNRASF SEDEVDLLIR LQKLLGNRWT LIAGRLPGRT ANDVKNFWNS HQLKKAKAAE 120 KKTAAAAPEK KPENTTVFKP QPLRLSDVQK ACTCSDTPGK PNNTPQTHSI WNPGNMPASP 180 PSLGFFLDDG SNSWWWWGDL LGDNGDQTLN PPELFRSPDS LNY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-21 | 14 | 110 | 7 | 102 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678315764 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019427402.1 | 2e-62 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9FNV9 | 3e-53 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A061ENQ7 | 1e-59 | A0A061ENQ7_THECC; R2R3 MYB transcription factor splice variant 1 | ||||
STRING | EOY03964 | 2e-60 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 5e-51 | myb domain protein 113 |
Publications ? help Back to Top | |||
---|---|---|---|
|