PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678313963
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 617aa    MW: 69905.5 Da    PI: 6.4701
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678313963genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS405.55e-1242416142373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 +lL+ c e + s++ + ++++ arl elasp+g +p++R+aay+te+La r+ar+++++++  + +e +   +++   a++l+++++P++kf h+t N+
  678313963 241 LSLLVMCTEQIGSKNIATINHCFARLGELASPRGdSPVHRVAAYYTEGLALRVARQWPGIFEVTARREFD-LVEDDGSIAVRLLNQITPVMKFIHFTSNE 339
                689*******************************779************************988888886.5677888899******************* PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                 +l+a+e ++r+HiiDf++++GlQWp+++q+LasR+++p ++RiTg+g+    sk+el etg  L+ fAe+l++pfef+++v+++led++l++L+vk++E
  678313963 340 ILLRAFEDKDRIHIIDFQVKEGLQWPSFFQSLASRRGPPSHIRITGIGE----SKQELVETGVLLSGFAEALNLPFEFHPVVVDQLEDVRLWMLHVKENE 435
                *************************************************....*********************************************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                ++aVn+++qlh++ ++s + + +  ++L+l++s++P+ v+v+eqea+hn+ s+  r++++l+yysa+fds++ +lp es++rik+E++  grei+n++ac
  678313963 436 TVAVNCIFQLHEIINDSSKERRRLVDFLDLIRSTNPEAVIVAEQEAEHNEMSLDSRVVNSLKYYSAIFDSIDCSLPLESKARIKIEQM-YGREIRNIIAC 534
                ****************************************************************************************.9********** PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee......sgslvlgWkdrpLvsvSaW 373
                eg++r erhe++ kWr ++e+aGF+++ +se++ +  +++l++++  + y+ve++       + l+l W+d+pL+svSaW
  678313963 535 EGRDRLERHEKFDKWRLWMEQAGFRNMGISEREHSLSNMILKMYPhLEKYKVEKHetldsaTAFLTLSWRDQPLYSVSAW 614
                *********************************************9999****7766765466677************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.182214588IPR005202Transcription factor GRAS
PfamPF035141.7E-121241614IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MLVGCSSSVL SPRHRLRSEA AAQFQGFHIP VMGTKRLDLP CSFSRKDATS VTESGKAVGI  60
SVEKNVDKKA SSIPLLQQQP QNIKLLPVVS RKKKKKKQKN EDQFWEQIRT IRKRQAAEVS  120
DEEEICPKRV NRQSLGVDGG VNFPEPFPYL RFSSLPNVIW NDPFVTSFTD FGRGEEIVGK  180
IKEAASVSSS STTSSGCKDL IFEVDHELGH VSSGQGTKAA FTAEEDNGGN SFIEDDCIEL  240
LSLLVMCTEQ IGSKNIATIN HCFARLGELA SPRGDSPVHR VAAYYTEGLA LRVARQWPGI  300
FEVTARREFD LVEDDGSIAV RLLNQITPVM KFIHFTSNEI LLRAFEDKDR IHIIDFQVKE  360
GLQWPSFFQS LASRRGPPSH IRITGIGESK QELVETGVLL SGFAEALNLP FEFHPVVVDQ  420
LEDVRLWMLH VKENETVAVN CIFQLHEIIN DSSKERRRLV DFLDLIRSTN PEAVIVAEQE  480
AEHNEMSLDS RVVNSLKYYS AIFDSIDCSL PLESKARIKI EQMYGREIRN IIACEGRDRL  540
ERHEKFDKWR LWMEQAGFRN MGISEREHSL SNMILKMYPH LEKYKVEKHE TLDSATAFLT  600
LSWRDQPLYS VSAWSCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6324761525378Protein SCARECROW
5b3h_D3e-6324761525378Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19096RKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678313963
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072178.10.0scarecrow-like protein 28
SwissprotQ9CAN31e-170SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2G9H0900.0A0A2G9H090_9LAMI; Uncharacterized protein
STRINGEOY246320.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-171GRAS family protein