PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678312780

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bZIP

Protein Properties

Length: 340aa MW: 37542.4 Da PI: 6.8022

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678312780	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.6	3.2e-09	172	218	11	57
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 NR +A rs +RK +i eLe+kv++L++e ++L +l + 678312780 172 LANRHSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 218 56*********************************999877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-8	165	226	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.34E-9	169	217	No hit	No description
PROSITE profile	PS50217	9.013	170	227	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.1E-10	170	220	No hit	No description
CDD	cd14703	5.80E-22	170	216	No hit	No description
Pfam	PF00170	2.1E-7	171	218	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MQDPNSKQSP SHAPPYSGAM RTAHHRRAHS EFNFRVDLGS DQFDEPAGSF EEMGSEDDLL 60 STYMDIEKLC GGSGFADSGS DNVTCGGSSA AVKDKPGGGI RPRHRYSNSV DSSSLLLNES 120 TSSIEAKKAM APDKLAELWT IDPKRAKRFD SSNHHFLHQL QLWISTELFR ILANRHSAAR 180 SKERKARYIS ELERKVQTLQ TEATTLSAQL TLFQRDTTGL SKENTGLKLR LQAMEQQAQL 240 RDALNEALKQ EVERLRIATG ETSHNLDAFT FAPYNQAGYF PPQTTNHNLS AGGAQVSPYH 300 PHIPGGISSH QHDPLGRFQG LDIRNNEDTS VSASESSTTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678312780

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076587.1	1e-132	transcription factor RF2b
Swissprot	Q6S4P4	2e-92	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2G9GG82	1e-132	A0A2G9GG82_9LAMI; Uncharacterized protein
STRING	Migut.F01247.1.p	1e-120	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	8e-81	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]