PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678311541

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LBD

Protein Properties

Length: 150aa MW: 16485.5 Da PI: 8.9828

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678311541	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.1	1.3e-42	14	112	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lr+kC + C++apyfp ++p+kf nvh++FGasn++kll+++++++reda++sl++eAear++dPvyG+vg i+ lq+q+ ql++el+++++ 678311541 14 PCAACKYLRKKCLPRCTFAPYFPPQDPNKFLNVHRVFGASNITKLLNEIDPTQREDAVNSLAFEAEARVKDPVYGCVGAISILQNQVIQLQKELDATNA 112 7*********************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.766	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-42	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MSSSASRSLN SNPPCAACKY LRKKCLPRCT FAPYFPPQDP NKFLNVHRVF GASNITKLLN 60 EIDPTQREDA VNSLAFEAEA RVKDPVYGCV GAISILQNQV IQLQKELDAT NADIVRYSGG 120 LRSGYQEQQR RSTAAPAAAY SWNSGENGSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-59	4	124	1	121	LOB family transfactor Ramosa2.1
5ly0_B	5e-59	4	124	1	121	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678311541

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018625400.1	2e-64	PREDICTED: LOB domain-containing protein 25-like isoform X2
Swissprot	Q8L8Q3	1e-58	LBD25_ARATH; LOB domain-containing protein 25
Swissprot	Q9FML4	3e-58	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A1S3C8P8	2e-62	A0A1S3C8P8_CUCME; LOB domain-containing protein 25
STRING	XP_008458801.1	3e-63	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-60	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]