PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678311176
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 325aa    MW: 37839.4 Da    PI: 6.5131
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678311176genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1791.3e-5571361129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                +ppGfrFhPtdeelv++yL++kv+++++++ +vi++vd+yk+ePwdL++  ++ + e++ewyfFs++dkky+tg+r+nrat  g+Wkatg+dk+++s k+
  678311176   7 VPPGFRFHPTDEELVDYYLRRKVTSRRIDV-DVIRDVDLYKIEPWDLQAlcRIGSeEQNEWYFFSHKDKKYPTGTRTNRATVVGFWKATGRDKAIYS-KH 104
                69****************************.9***************954555552556**************************************.99 PP

        NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                el+g++ktLvfykgrap+g+k+dW+mheyrle
  678311176 105 ELIGMRKTLVFYKGRAPSGQKSDWIMHEYRLE 136
                9*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-615156IPR003441NAC domain
PROSITE profilePS5100559.5497156IPR003441NAC domain
PfamPF023651.2E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MNAFSQVPPG FRFHPTDEEL VDYYLRRKVT SRRIDVDVIR DVDLYKIEPW DLQALCRIGS  60
EEQNEWYFFS HKDKKYPTGT RTNRATVVGF WKATGRDKAI YSKHELIGMR KTLVFYKGRA  120
PSGQKSDWIM HEYRLETDEN AAPQEEGWVV CRVFKKRIAA TTRKFSEQDS PIWYDDHVSF  180
MPDMDSPKPN AVHHRPHSYC KTEMELQYAR SGMQLPPDHY LHLPFLESPK IPIPSFGPVH  240
EISHEKQFQA LGTNNFSSAP AINNGDLSND YVTDWRVLDK FVASQLSHDE NDVFSRGEEM  300
NPFMEKHDNN TSASASNQLV DDVWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-49615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678311176
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076335.11e-149NAC domain-containing protein 7
SwissprotF4HYV51e-123NAC26_ARATH; NAC domain-containing protein 26
TrEMBLA0A2G9GZR11e-149A0A2G9GZR1_9LAMI; Uncharacterized protein
STRINGGorai.001G048200.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-116NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]