PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678310937

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

WRKY

Protein Properties

Length: 317aa MW: 35449.6 Da PI: 6.7983

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678310937	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.6	1.1e-32	162	220	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCts++C vkk+vers ed ++v++tYeg H+h+ 678310937 162 LDDGYRWRKYGQKGVKNSPFPRSYYRCTSTSCGVKKRVERSPEDRSIVITTYEGVHTHP 220 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.3E-34	147	222	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-29	154	222	IPR003657	WRKY domain
PROSITE profile	PS50811	30.745	157	222	IPR003657	WRKY domain
SMART	SM00774	1.2E-37	162	221	IPR003657	WRKY domain
Pfam	PF03106	2.5E-26	163	220	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MAAPLGDENP LQKFAVFESD SDQLLMMMAP GASFYGVSEG EEEEGDHQKH KSPLGFLDML 60 GSQGEFGSPS TFDELLQNVG ILPEGQSTPA AEYSEVADTA NSSNSTSLST NEADGRPKPR 120 AADGDQSQAN NKKQLSAVKK KIQKREREPR FAFMTRSEID HLDDGYRWRK YGQKGVKNSP 180 FPRSYYRCTS TSCGVKKRVE RSPEDRSIVI TTYEGVHTHP CPITPRGAFG LLSETPPFGR 240 VAYTQSQFIT MPQKLQQRMP YLPSWRPQPS FSSITEVASS ERPFWPPGRP SLELERDHGL 300 LQDMLPSSRI LKDPKRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-24	155	222	10	77	Probable WRKY transcription factor 4
2lex_A	1e-24	155	222	10	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678310937

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022849331.1	5e-71	probable WRKY transcription factor 48
Refseq	XP_022849332.1	5e-71	probable WRKY transcription factor 48
Refseq	XP_022849333.1	5e-71	probable WRKY transcription factor 48
Refseq	XP_022849334.1	5e-71	probable WRKY transcription factor 48
Swissprot	Q9FGZ4	2e-46	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A2G9HNW2	3e-79	A0A2G9HNW2_9LAMI; Uncharacterized protein
STRING	cassava4.1_011940m	5e-65	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-48	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]