PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678310847
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 332aa    MW: 37045.5 Da    PI: 5.9468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678310847genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18e-1783133155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr++  +g+WvAeIr+p     +   r +lg+f t  eAa a+++a+++++g
  678310847  83 CNYRGVRQRT-WGKWVAEIREP-----HrgSRLWLGTFNTGHEAAVAYDEAARAMYG 133
                56*****999.**********6.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1283133IPR001471AP2/ERF domain
CDDcd000182.12E-3183141No hitNo description
PROSITE profilePS5103221.77384141IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2184141IPR016177DNA-binding domain
SMARTSM003809.2E-3684147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3184141IPR001471AP2/ERF domain
PRINTSPR003671.7E-98596IPR001471AP2/ERF domain
PRINTSPR003671.7E-9107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSTEIARRDL NLTHQPMDFL KMRKSRGGKV GTNSIAETLA KWREYNSKLD TVDKDNKKVY  60
KAPAKGSKKG CMRGKGGPEN ARCNYRGVRQ RTWGKWVAEI REPHRGSRLW LGTFNTGHEA  120
AVAYDEAARA MYGPGARLNF PCCSSSKDSC SLPTTSDSGN SEVLLGDRGP DTGVSEIKKE  180
ADEACPENMD YRHPSVGNET ISICKQQGID ETPAKIRMED EAAAEESVST QSTMYIHDPS  240
ALSGQQQLDE MFDVDDLLAA LDSAPHLTRR PQVSLATSFP QHADRMPTES LSLPNQQPPY  300
DYGLDFLKPG RQEDYNTMFL NLFMDFDKDM ML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1784141260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678310847
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.16e-42ERF family protein