PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678309759

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GRAS

Protein Properties

Length: 715aa MW: 78092.2 Da PI: 6.2698

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678309759	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	312.1	1.2e-95	351	708	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL+++Ae v++g++ la+ +Larl+++ sp+g p+qR+a+y +eAL+ l+++++++ + l ++++t++ + ++++ a+k+fse+sP+l f++lt Nq 678309759 351 DLLYQAAELVQTGNFVLAHGILARLNHQLSPNGIPFQRAAFYSKEALQLLLQSTSNNVDDPLmtTVRKTPPFSIISRIGAYKAFSEISPLLHFQNLTSNQ 450 79*************************************************99999999854555666667*********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 aIle++eg +r+HiiDfdi++G+QW++L+q+La R++ + s++iT+++sp +++ el ++e+L++fA+ ++++fef++ +++ +l++ ++++ 678309759 451 AILESLEGFNRIHIIDFDIGYGGQWASLIQELALRSGRSTSMKITAIVSPLINNHLELGLIRENLTQFANDVNISFEFEAT---SID--SLSSGSWSEAG 545 *********************************************9999**********************94...444..44666789999 PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvva 299 a+aVnl + + + s++ +L+lvk+l+P++vv ++q +d+++ sF +++++al+ ++++ds+ +a+ ++ ++ +k+E +l++++++ +v+ 678309759 546 AVAVNLPVGSVANY--QFSMPL----ILRLVKQLRPRIVVSTDQGCDRTDLSFPDHLIHALHSLTTVLDSIyAAN--PHLDTLQKIESFLIQPALERIVT 637 999999666555..566665....*******************************************5555..5668999***********9 PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++ ++ ++Wr++l ++GF+pv++s+ a++qa++++++++++g++ve+++ slvl+W++++L++vSaWr 678309759 638 SRFRS----LKKTQHWRSMLLSSGFSPVAFSNLAESQAECVINRTPVQGFQVEKRQSSLVLCWRGQELTAVSAWR 708 88777....99999**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.564	323	688	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.3E-93	351	708	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence Send to blast
MKGMPLPLDF EGKEVLDLDL IVKNRTFFSD SGGELLQLSN CSGFGEPTSV LESASTPSRP 60 TSSSTLSSSL GEGGGSTVAG SASTDTAAKW QRGSTATSSN AVGKALIASP RSMEFEGVGC 120 GGTEKFTMED WESVLSASTA VSPNHEESIL RWIMADAEDA ALVMNKAPQI GAGGVFPAAE 180 FDFSSGFAAV HQTPTLPVFL DNDRPSSQRI SSLSPYPDQP TCFKFSPISQ GILHPCPETK 240 PSILNSHILI NQQSQNPSFF FPVPSSVQQE QSIFVHPPAK RQNFGRFADV GLDSAGQISK 300 GPFMDSGQHT VFLQQQFSPQ LQFLPSCQHQ WQKEKPKLTV CDDFGQQATS DLLYQAAELV 360 QTGNFVLAHG ILARLNHQLS PNGIPFQRAA FYSKEALQLL LQSTSNNVDD PLMTTVRKTP 420 PFSIISRIGA YKAFSEISPL LHFQNLTSNQ AILESLEGFN RIHIIDFDIG YGGQWASLIQ 480 ELALRSGRST SMKITAIVSP LINNHLELGL IRENLTQFAN DVNISFEFEA TSIDSLSSGS 540 WSEAGAVAVN LPVGSVANYQ FSMPLILRLV KQLRPRIVVS TDQGCDRTDL SFPDHLIHAL 600 HSLTTVLDSI YAANPHLDTL QKIESFLIQP ALERIVTSRF RSLKKTQHWR SMLLSSGFSP 660 VAFSNLAESQ AECVINRTPV QGFQVEKRQS SLVLCWRGQE LTAVSAWRCR FRSSP

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence Send to blast

MKGMPLPLDF EGKEVLDLDL IVKNRTFFSD SGGELLQLSN CSGFGEPTSV LESASTPSRP  60
TSSSTLSSSL GEGGGSTVAG SASTDTAAKW QRGSTATSSN AVGKALIASP RSMEFEGVGC  120
GGTEKFTMED WESVLSASTA VSPNHEESIL RWIMADAEDA ALVMNKAPQI GAGGVFPAAE  180
FDFSSGFAAV HQTPTLPVFL DNDRPSSQRI SSLSPYPDQP TCFKFSPISQ GILHPCPETK  240
PSILNSHILI NQQSQNPSFF FPVPSSVQQE QSIFVHPPAK RQNFGRFADV GLDSAGQISK  300
GPFMDSGQHT VFLQQQFSPQ LQFLPSCQHQ WQKEKPKLTV CDDFGQQATS DLLYQAAELV  360
QTGNFVLAHG ILARLNHQLS PNGIPFQRAA FYSKEALQLL LQSTSNNVDD PLMTTVRKTP  420
PFSIISRIGA YKAFSEISPL LHFQNLTSNQ AILESLEGFN RIHIIDFDIG YGGQWASLIQ  480
ELALRSGRST SMKITAIVSP LINNHLELGL IRENLTQFAN DVNISFEFEA TSIDSLSSGS  540
WSEAGAVAVN LPVGSVANYQ FSMPLILRLV KQLRPRIVVS TDQGCDRTDL SFPDHLIHAL  600
HSLTTVLDSI YAANPHLDTL QKIESFLIQP ALERIVTSRF RSLKKTQHWR SMLLSSGFSP  660
VAFSNLAESQ AECVINRTPV QGFQVEKRQS SLVLCWRGQE LTAVSAWRCR FRSSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-27	355	710	25	381	Protein SCARECROW
5b3h_A	3e-27	355	710	24	380	Protein SCARECROW
5b3h_D	3e-27	355	710	24	380	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678309759

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090295.1	0.0	scarecrow-like protein 6
Swissprot	O81316	1e-118	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2G9GWL5	0.0	A0A2G9GWL5_9LAMI; Uncharacterized protein
STRING	Migut.B01597.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6253	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-120	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]