PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678309612 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 197aa MW: 21892.7 Da PI: 8.0749 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.9 | 2.3e-05 | 26 | 62 | 1 | 38 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-S CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKl 38 r++++ +rE++ Rd+iN+ f++L l + + +++K 678309612 26 RKVNKAAREKKKRDQINELFFKLGASLALD-HSSHGKD 62 688999*****************8888774.2344444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-9 | 22 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-6 | 23 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.588 | 25 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.07E-4 | 26 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence Send to blast |
MTASESASDA AGGCRRTRNS EKTTPRKVNK AAREKKKRDQ INELFFKLGA SLALDHSSHG 60 KDSLLKETMR ILKHLRCLVD SLHKDNASLV SEFNYIEIEK NELAEEVNQL KTAVQMQKKS 120 LNCYSNNLSV LNKEAAAAAA LRSYLSPMNL EDSTGGDVPA KVTKPYPKYP SDSWPSQILE 180 QHPSALEIFD TPEESVV |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 31 | 39 | AREKKKRDQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678309612 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098610.1 | 2e-37 | transcription factor bHLH47 isoform X2 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4307 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-22 | bHLH family protein |