PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678309247
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family TCP
Protein Properties Length: 270aa    MW: 30300.1 Da    PI: 9.5718
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678309247genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.25.2e-3334150289
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 
                 gkkdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak+ i+el+ ++ ++ s+  +  s   + +++s +            
  678309247  34 FGKKDRHSKVCTVKGLRDRRVRLSVPTAIQIYDLQDRLGLSQPSKVVDWLLNAAKKDIDELPPLQIPAGSFLsQ--SVIAMLNAQSDKpglkingsnvgf 131
                68**************************************************************6666655532..222222222222245555544444 PP

        TCP  89 ..................k 89 
                                  +
  678309247 132 ggagqshrldescwpyvsS 150
                4444444444444443330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-2835103IPR005333Transcription factor, TCP
PROSITE profilePS5136931.7243694IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKSQENSKTE NPKASSWSST KMKDPRIVGV SRAFGKKDRH SKVCTVKGLR DRRVRLSVPT  60
AIQIYDLQDR LGLSQPSKVV DWLLNAAKKD IDELPPLQIP AGSFLSQSVI AMLNAQSDKP  120
GLKINGSNVG FGGAGQSHRL DESCWPYVSS ESSFGYRQSF SSYHNSSNQM NASFLRWDSS  180
DFSLSHPPRS SKVLLTSATE QEWHDPSVLQ LQQPSLIYHN GIVTQTQPYL PLPRFDSGSE  240
PIREIHFNMA RINEDPLHNK GQCFVHNEFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-184195155Putative transcription factor PCF6
5zkt_B3e-184195155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678309247
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099021.13e-63transcription factor TCP5-like
RefseqXP_011099023.13e-63transcription factor TCP5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5