PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678309225 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | LBD | ||||||||
Protein Properties | Length: 259aa MW: 28022.9 Da PI: 8.921 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.8 | 6.8e-28 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +++l++a ++ r+++++sl+yeA+ r+ dP++G+vg++ +++++ +q +++++ 678309225 4 SCNGCRVLRKGCSDKCTIRPCLewirsPEAQANATVFLAKFYGRAGLVNLINAGAPNLRPAILKSLLYEACGRIVDPISGSVGLLCSGTWKRCQDAVDAV 103 6***********************************************************************************************9999 PP DUF260 96 llke 99 l+++ 678309225 104 LAGS 107 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.973 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-22 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDKCT IRPCLEWIRS PEAQANATVF LAKFYGRAGL VNLINAGAPN 60 LRPAILKSLL YEACGRIVDP ISGSVGLLCS GTWKRCQDAV DAVLAGSPIT DIVAPDESDT 120 APPLKLPYDI RHVSNKDRDG TGLNQLQSRR KFKRSGKKRA RVSGSSEERS PSHHGSSLSH 180 QSAAPAETNA QRGSSSSRDS ACPSSSETHV ADPDDRQIDL NLTLGLEPVK RCVKHRDLPL 240 DGDAAGLHKM ELRLQLPMC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678309225 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099556.1 | 2e-89 | LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 4e-74 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A022RX57 | 4e-85 | A0A022RX57_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H00213.1.p | 7e-86 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-74 | LOB domain-containing protein 41 |