PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678309177 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 163aa MW: 18881.1 Da PI: 6.2446 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 8 | 60 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +t+f++eql+ Le++F + p+ ++ LAkklgL++rqV +WFqN+Ra+ k 678309177 8 KTRFSHEQLRSLETAFTAEERPDSGMKLGLAKKLGLETRQVAIWFQNQRARSK 60 79*************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 94.9 | 8.6e-31 | 8 | 97 | 3 | 92 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k r+s+eq+++LE+ F++ee+ ++ K la++Lgl++rqva+WFqn+RAR k +q+E+d ++Lk++yd+l+ + L+ke++ L +++ 678309177 8 KTRFSHEQLRSLETAFTAEERPDSGMKLGLAKKLGLETRQVAIWFQNQRARSKGRQMERDLDVLKSNYDHLVLGFQDLRKENQLLLLQVQ 97 89*********************************************************************************9988877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.985 | 2 | 62 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-14 | 4 | 66 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-17 | 7 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 7.9E-17 | 8 | 60 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.74E-14 | 8 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-19 | 8 | 68 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 37 | 60 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 5.5E-11 | 63 | 103 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 163 aa Download sequence Send to blast |
MPTLTSMKTR FSHEQLRSLE TAFTAEERPD SGMKLGLAKK LGLETRQVAI WFQNQRARSK 60 GRQMERDLDV LKSNYDHLVL GFQDLRKENQ LLLLQVQRLR EMEEDDSKNH RTSGARENPG 120 FLGEPSSEMV EAKYHLDAGC YLHEGSFGDG CSFQTHDSQW WDF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678309177 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842101.1 | 2e-35 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 1e-24 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A2G9GG26 | 2e-43 | A0A2G9GG26_9LAMI; Uncharacterized protein | ||||
STRING | Migut.E00626.1.p | 9e-35 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10273 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.2 | 6e-17 | homeobox 7 |
Publications ? help Back to Top | |||
---|---|---|---|
|