PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678309113

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 327aa MW: 37251.2 Da PI: 8.2835

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678309113	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.9	2.4e-50	42	165	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 p+GfrFhPtd+elv yL++k++g ++e+ +i+e+diy+++Pw+Lp + +e+ewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + ++ +g 678309113 42 PAGFRFHPTDDELVESYLCRKCAGLQVEA-PIIAEIDIYRFDPWELPDLALYGEREWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGK--QKIMG 138 89**********************999.88***********65556799********************************98..889 PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +kk Lvfy g+apkg+kt+W+mheyrl 678309113 139 IKKALVFYAGKAPKGVKTNWIMHEYRL 165 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-60	31	191	IPR003441	NAC domain
PROSITE profile	PS51005	58.27	41	191	IPR003441	NAC domain
Pfam	PF02365	2.0E-26	42	165	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MGISSFSWGG EGGTREEKKK LLEWMFCGGS RMKAGAQKLS FPAGFRFHPT DDELVESYLC 60 RKCAGLQVEA PIIAEIDIYR FDPWELPDLA LYGEREWYFF SPRDRKYPNG SRPNRAAGTG 120 YWKATGADKP IGKQKIMGIK KALVFYAGKA PKGVKTNWIM HEYRLANVDR SAGKRTTLRL 180 DEWVLCRIYN KKGGASATFH SAPQKADHFP EDEEQKPKID SSEYSSVVNP APLFRPREAL 240 VPHSNFPFNS SELLLKFPTH SSSSEHVQST EFKEVQSDPK WTDFETSLDM QSSYVAGFPE 300 DIFGSQMPYD QLPLFQDMFA YMQKKPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-79	28	192	2	169	Stress-induced transcription factor NAC1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678309113

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099683.1	1e-135	NAC domain-containing protein 2-like
Swissprot	Q39013	1e-104	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	S8EEE4	1e-145	S8EEE4_9LAMI; Uncharacterized protein
STRING	Migut.L00568.1.p	1e-121	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1239	24	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-106	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]