PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678307681

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

MYB

Protein Properties

Length: 254aa MW: 28094 Da PI: 8.9065

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678307681	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl 678307681 14 KGAWTKEEDDRLIAYIRTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	58.8	1.3e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w+++ 678307681 67 RGNFTPEEDDLIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.629	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.03E-30	13	108	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.35E-11	16	61	No hit	No description
PROSITE profile	PS51294	28.885	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.33E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLIAYIR THGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TPEEDDLIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSKG 120 IDPTSHRPIN QTKMIPSSGG VAGEVVPVKE EATSMISTEE KSPSFVGSPD LNLELRISLP 180 HQGTASSSSS SSSCFDCSLG IRSGRDCGCS RKSMKLAEGG STRTGYDFLR LKPDVAACDF 240 RDSIGTESHC VFLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-29	13	116	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678307681

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017420603.1	1e-112	PREDICTED: myb-related protein 308-like
Swissprot	P81393	1e-104	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A2G9HNR9	1e-111	A0A2G9HNR9_9LAMI; Transcription factor, Myb superfamily
STRING	XP_009376958.1	1e-110	(Pyrus x bretschneideri)
STRING	XP_009376962.1	1e-110	(Pyrus x bretschneideri)
STRING	POPTR_0004s18020.1	1e-109	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-103	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]