PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678305776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TCP | ||||||||
Protein Properties | Length: 363aa MW: 40281.3 Da PI: 6.0797 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 87.2 | 3.8e-27 | 98 | 209 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................................... 65 g+kdrhsk++T +g+RdRR+Rls+++a +++ Lqd+LG+ ++sk ++WLl + k++i +l+ + 678305776 98 GGKDRHSKVCTVRGLRDRRIRLSVPTAVQLYSLQDRLGLSQPSKVVDWLLDATKHEIEKLPPLpainmsmnmllpitptpplpfhfqpyapthflgkdlg 197 79***********************************************************997777777777766666666666666665555555555 PP TCP 66 ...........s 66 678305776 198 lvgamglgmgmA 209 555555554440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.4E-25 | 99 | 159 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.248 | 99 | 157 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MRTQTALPLD PSSYQLHLLR CIARSATGES VTHLLRKSAL PEEKKRDSPG PEMMADGGDK 60 AEEVAERTAP TAAASCSRKW SSSSYKNPRI VRVSRSFGGK DRHSKVCTVR GLRDRRIRLS 120 VPTAVQLYSL QDRLGLSQPS KVVDWLLDAT KHEIEKLPPL PAINMSMNML LPITPTPPLP 180 FHFQPYAPTH FLGKDLGLVG AMGLGMGMAT DQGVMKEKQE EAPPTEEVGL VGQNLTLNNS 240 AASFQNPYFH WDLHNPSHFG LGAAGFNFPF HTHTHAEEEE EEEEEEEDYD DKQKREEEED 300 SSNQIQNSFH CTPHYFCSTP FLHDPSLLPP TTLKLINQPA SSAAPPHSDC STATPQLKTV 360 EPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-17 | 104 | 158 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-17 | 104 | 158 | 1 | 55 | Putative transcription factor PCF6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678305776 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012854041.1 | 9e-51 | PREDICTED: transcription factor TCP5 | ||||
STRING | Migut.D01635.1.p | 3e-50 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |