PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678305242
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 744aa    MW: 81735.2 Da    PI: 6.1268
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678305242genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1959114156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  678305242  59 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 114
                688999***********************************************998 PP
2START217.54.5e-682474671206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ela +a++el+++a+a++p+W + +    e + ++e+ ++f+++ +      ++ea+r+s+vv+m++++lve+l+d++ qW+  +     +a+tlev+s+
  678305242 247 ELAVTAMEELIRMAQAGDPLWITNPdspsETLAEEEYFRIFPRGIGpktlgLKSEASRESAVVIMNHVNLVEILMDVN-QWSSVFSsivsRAMTLEVLST 345
                57899********************999999************999********************************.********************* PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds ++ +    + R++++pSg+li++++ng+skvt vehv++++r +h +
  678305242 346 GvagnyhGALQVMTAEFQVPSPLVPtRENYFVRYCKQHTDGTWAVVDVSLDSLRPTS----ISRCRRRPSGYLIQELPNGYSKVTCVEHVEVDDRAVHTI 441
                ******************************************************976....7************************************** PP

                HHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 181 lrslvksglaegaktwvatlqrqcek 206
                +++lv+sgla+ga++wvatl+rqce+
  678305242 442 YKPLVNSGLAFGARRWVATLDRQCER 467
                ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-2144110IPR009057Homeodomain-like
SuperFamilySSF466891.13E-1847116IPR009057Homeodomain-like
PROSITE profilePS5007116.60156116IPR001356Homeobox domain
SMARTSM003895.2E-1857120IPR001356Homeobox domain
PfamPF000462.1E-1759114IPR001356Homeobox domain
CDDcd000864.90E-1859117No hitNo description
PROSITE profilePS5084844.402238470IPR002913START domain
SuperFamilySSF559611.74E-36239469No hitNo description
CDDcd088752.35E-124242466No hitNo description
SMARTSM002349.0E-68247467IPR002913START domain
PfamPF018521.0E-56248467IPR002913START domain
Gene3DG3DSA:3.30.530.205.8E-5352466IPR023393START-like domain
SuperFamilySSF559616.69E-19487577No hitNo description
SuperFamilySSF559616.69E-19609714No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MFQQNMFDHH LLDISGGGHK SPENELDLIR EDEYESKSGT DINENASGDD QDPDQRAKKK  60
RYHRHTQHQI QEMESFFKEC PHPDDKQRKE LGRRLGLEPL QVKFWFQNKR TQMKAQHERH  120
ENTQLRNENE KLRAENIRYK EALSNATCPN CGGPAAIGEM SFDEQHLRIE NSRLREEIDK  180
ISGIAAKYVG KQALTFPHLP PGSSRSNDLG VGSFGAQSGL TGEIYGASDL LRSVSGPSDA  240
DKPAIIELAV TAMEELIRMA QAGDPLWITN PDSPSETLAE EEYFRIFPRG IGPKTLGLKS  300
EASRESAVVI MNHVNLVEIL MDVNQWSSVF SSIVSRAMTL EVLSTGVAGN YHGALQVMTA  360
EFQVPSPLVP TRENYFVRYC KQHTDGTWAV VDVSLDSLRP TSISRCRRRP SGYLIQELPN  420
GYSKVTCVEH VEVDDRAVHT IYKPLVNSGL AFGARRWVAT LDRQCERLAS VMANNISAGD  480
VGVISSPEGR KSMLKLAERM VVSFCTGVGA STAHTWTTLS GSGADDVRVM TRKSMDDPGR  540
PPGIVLSAAT SFWLPIPPKR VFDFLRDENS RSEVRIEIRF PVGFTFPLKE ISSLLLCVKW  600
DILSNGGLVQ EMAHIANGRD PGNAVSLLRV NSANSSQSNM LILQESCTDS TGSYVIYAPV  660
DIVAMNVVLS GGDPDYVALL PSGFAILPDG PNNQSGGIPD VGSGGSLLTV AFQILVDSSK  720
GSKGQCSVKG SNDHNCSFRL LGND
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678305242
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086174.20.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein MERISTEM L1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLS8CYM20.0S8CYM2_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]