PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678304976
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 483aa    MW: 54285.9 Da    PI: 6.8602
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678304976genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.8e-193884148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+++ ++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
        678304976 38 KGPWTQEEDDKIRELVTKYGPTKWSIIAKSLP-GRIGKQCRERWHNHL 84
                     79******************************.*************97 PP
2Myb_DNA-binding49.21.2e-1590133146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++W+ +E++ l+ a++ +G++ W+  a+ ++ gRt++ +k++w++
        678304976  90 KDAWSLDEELTLLSAHRIHGNK-WAELAKLLP-GRTDNAIKNHWNS 133
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.774132IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.3E-11838IPR009057Homeodomain-like
PROSITE profilePS5129431.583388IPR017930Myb domain
SuperFamilySSF466894.4E-3035131IPR009057Homeodomain-like
SMARTSM007171.3E-173786IPR001005SANT/Myb domain
PfamPF002491.4E-173884IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-273987IPR009057Homeodomain-like
CDDcd001671.36E-154084No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2188139IPR009057Homeodomain-like
SMARTSM007171.6E-1489137IPR001005SANT/Myb domain
PROSITE profilePS5129420.03289139IPR017930Myb domain
PfamPF002494.3E-1490133IPR001005SANT/Myb domain
CDDcd001675.31E-1192135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MLHVLRLDYN HAAEFFPDRS EVQCLHRWQK VLNPELIKGP WTQEEDDKIR ELVTKYGPTK  60
WSIIAKSLPG RIGKQCRERW HNHLNPHIKK DAWSLDEELT LLSAHRIHGN KWAELAKLLP  120
GRTDNAIKNH WNSSLKKKLD FYLATGNLPQ DSKNVHQNGV EDTLRRAALL GEPLVSSKDE  180
ASGEISDACK VGKLGTVSTF HDSMSHHPST VMLPDSSTRR ELSLNSEDTL TGYVYSSEKR  240
GICGEVDQSC MERALVNNGV SPYGTLYYEP PTLDNCNIQH SNLPSTSMMQ SGEDIDPETP  300
PSGFFTPPSG KGRSLFAQTP ESLLRMAAKS FQDTPSIIRK RKSEQLPKEN AVCSAELQHN  360
NSSQNPCNAD LQHNSSSENS ELQRNALSLD RNMDDGLSSS KSFNLSPLYR LNFKRTLVIK  420
SVEKQLDFTN DMNQDCSDDD VRYEKVDQAA PVTNFRDPVR GLLLLFSLRS PSAVGYLLAH  480
TLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-62813928159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-62813928159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678304976
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077474.11e-161transcription factor MYB3R-3-like isoform X1
RefseqXP_011077475.11e-161transcription factor MYB3R-3-like isoform X1
RefseqXP_011077476.11e-161transcription factor MYB3R-3-like isoform X1
RefseqXP_020549498.11e-161transcription factor MYB3R-3-like isoform X1
RefseqXP_020549499.11e-161transcription factor MYB3R-3-like isoform X1
RefseqXP_020549500.11e-161transcription factor MYB3R-3-like isoform X1
RefseqXP_020549501.11e-161transcription factor MYB3R-3-like isoform X1
RefseqXP_020549502.11e-161transcription factor MYB3R-3-like isoform X1
RefseqXP_020549503.11e-161transcription factor MYB3R-3-like isoform X2
TrEMBLA0A4D9B7Q01e-155A0A4D9B7Q0_SALSN; Myb proto-oncogene protein, plant
STRINGMigut.L01945.1.p1e-148(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-102myb domain protein 3r-5