PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678302170

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SRS

Protein Properties

Length: 276aa MW: 29350.8 Da PI: 9.6117

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678302170	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	181.8	3e-56	81	223	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstklssaeskkel 100 t+sCqdCGnqakkdC+h+RCRtCCksrgf C+thvkstWvpaa+rr++ + + + ++ sk++r ++++++ + + s+++ + 678302170 81 RTSSCQDCGNQAKKDCSHRRCRTCCKSRGFYCSTHVKSTWVPAARRRDHDPASSPS---------TSVSKKRRLGgasQTTSTTPPRRLDTISGHQG-GS 170 6789******************************************74333222.........23333333331101223333344444445444.44 PP DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +s+P +v ++avfrcvrv+++ddge+++aYq+av igGhvf+G+Ly++ +e 678302170 171 LRESMPGQVTAPAVFRCVRVAALDDGEDQCAYQAAVRIGGHVFRGFLYEHRVE 223 4566******************************************99776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.4E-53	82	222	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-26	84	126	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.3E-24	175	219	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MWSSEAAGSR HGVPPEFFFV APGAVPTFDP NATIGVIPLL TAALYHAPPP PPPPPSSEEQ 60 QIQRHTSSSS KKAMSLESSN RTSSCQDCGN QAKKDCSHRR CRTCCKSRGF YCSTHVKSTW 120 VPAARRRDHD PASSPSTSVS KKRRLGGASQ TTSTTPPRRL DTISGHQGGS LRESMPGQVT 180 APAVFRCVRV AALDDGEDQC AYQAAVRIGG HVFRGFLYEH RVEARRGLPN ISDLHLSGRA 240 PSDAPSSSSH LILHPADLGG GSRAGIAGSN YGASLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	143	RRRDHDPASSPSTSVSKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678302170

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012838439.1	5e-78	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	1e-58	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A022R8A6	2e-76	A0A022R8A6_ERYGU; Uncharacterized protein
STRING	Migut.N02371.1.p	2e-77	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-60	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]