PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678302010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | SBP | ||||||||
Protein Properties | Length: 409aa MW: 46112.2 Da PI: 10.0791 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.4 | 6.5e-41 | 145 | 221 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls ++yhrrhkvCe+hsk+pvv+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ 678302010 145 CLVDGCHADLSLGRDYHRRHKVCEAHSKTPVVTIAGREQRFCQQCSRFHSLVEFDEAKRSCRKRLDGHNRRRRKPQP 221 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-33 | 138 | 206 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.804 | 142 | 219 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.79E-38 | 143 | 224 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.7E-31 | 145 | 218 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MNLNRGTYFL SSTIRKADGI RSRVRVREKR RRVGPRGFPR DKKEWGGPPF LSLFLLLLLG 60 LSTQDFRFTF PISLILALSL LGSPTCQGYL EGPAEPDTKV SVGNTEFTTI CKAVPYLMED 120 ESSSSSTKRA KPPSSSTSQS QVPNCLVDGC HADLSLGRDY HRRHKVCEAH SKTPVVTIAG 180 REQRFCQQCS RFHSLVEFDE AKRSCRKRLD GHNRRRRKPQ PESVAPNSRF PPFGCAQMMR 240 PSVLPPAWPG FIKTENDLAL CSNQRRTESF LKFPFKGIDH HQHQQQFHFD ETSISSMPSD 300 PRFFNERRNL QVVETQGAPS LLSTSPQATE EFNLNRRYRN EGAMPPSTTQ AMAHGFNFGP 360 FHQFPQDIKP VVSSAQIHGT TLHFPEMFQH GGASSSGGGS HQTLSFMWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-28 | 136 | 218 | 2 | 84 | squamosa promoter binding protein-like 4 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 32 | KRRRV |
2 | 201 | 218 | KRSCRKRLDGHNRRRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678302010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G9FXF5 | 6e-73 | A0A2G9FXF5_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4920 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 3e-43 | SBP family protein |