PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678301695
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25196.2 Da    PI: 10.332
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678301695genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12.1e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krie+ks rqvtf+kRrng+lKKA ELSvLCd++v +iifss+gkl+ y+s
  678301695  9 KRIEDKSARQVTFAKRRNGLLKKARELSVLCDVDVGLIIFSSRGKLFHYCS 59
               79***********************************************96 PP
2K-box25.65e-101071513579
      K-box  35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                 R l   ++++ sl +L +Le+qLe +l + R+ K++lll++++e
  678301695 107 ARELTEGCVDQFSLTDLIHLEKQLEIALIRTRAAKTHLLLDSLRE 151
                56677778999*****************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.361161IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002657.40E-37261No hitNo description
SuperFamilySSF554552.09E-28266IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-5108150IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRRKLEIKR IEDKSARQVT FAKRRNGLLK KARELSVLCD VDVGLIIFSS RGKLFHYCST  60
SRFTKFKPNL AFFDNFSSRK IFTQIMPEQC SNSPGALTVS DFLDSVAREL TEGCVDQFSL  120
TDLIHLEKQL EIALIRTRAA KTHLLLDSLR EEDGFRGKKT PAGEGMLPAL TQHQSALSSL  180
REFIISKPRF LQSQVVGRKP TQSTKEVMMD LNVVARDQIM QD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19160160MEF2C
5f28_B3e-19160160MEF2C
5f28_C3e-19160160MEF2C
5f28_D3e-19160160MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678301695
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8CX766e-48S8CX76_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.11e-32AGAMOUS-like 31