PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678301307 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 470aa MW: 51839.3 Da PI: 4.6084 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8.1e-18 | 58 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ede l+d+v+++G g+W+++ ++ g+ R++k+c++rw ++l 678301307 58 KGPWTSREDEVLIDYVQKHGEGNWNAVQKHTGLSRCGKSCRLRWANHL 105 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 9.8e-15 | 111 | 154 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++ eE+ +++++++++G++ W++ a +++ gRt++++k++w++ 678301307 111 KGPFSSEEERQIIELHAKMGNK-WARMAVELP-GRTDNEIKNFWNT 154 79********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.368 | 53 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.36E-30 | 55 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-15 | 57 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-16 | 58 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 59 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.42E-12 | 60 | 105 | No hit | No description |
PROSITE profile | PS51294 | 23.459 | 106 | 160 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-15 | 110 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 111 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 113 | 159 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.89E-11 | 113 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MFEFIPFHAV TDLGPYDQEM SLTSESDEAM LPHNGIGSPP ADDDNSGGNA GSNSSMKKGP 60 WTSREDEVLI DYVQKHGEGN WNAVQKHTGL SRCGKSCRLR WANHLRPDLK KGPFSSEEER 120 QIIELHAKMG NKWARMAVEL PGRTDNEIKN FWNTRIKRRQ RAGLPIYPVD ICPQLKSENL 180 QRDEIDSYSM GEVRPPDFAP VEDFDIPPIG FKSPSQPLYS PTHDISTVSM PEIPSSLILA 240 QDPQPSYSDR SLCSALHSSK PPCGSEFLFA DYNTPIVSSL TGANHLNGDG SLQIARSLGF 300 PSFYEHNSVS DQAVSADLFP GNHTILTSTS ELPSLQNQAG GWGVLPPSFP PPVVDDILIQ 360 PTEAENTCMF SPRNSGLLDN VLYESEIKKF NANTFLYPET SHGPAMAPYA VNDSTQDPHE 420 NMWGYDDQFS PLGHSSSSVF CDGSPFSANS FEELQSANGF PGDHSRTYYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-32 | 53 | 159 | 22 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678301307 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090254.1 | 1e-151 | transcription factor GAMYB-like | ||||
TrEMBL | A0A068UQ74 | 1e-142 | A0A068UQ74_COFCA; Uncharacterized protein | ||||
STRING | XP_009786742.1 | 1e-127 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 9e-72 | myb domain protein 33 |