PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678301159
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 351aa    MW: 40010.5 Da    PI: 8.2282
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678301159genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.3e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien   rqvtf+kRrng++KKA+ELSv+Cd+ev +iifs+tgklye+++
  678301159  9 KKIENAASRQVTFTKRRNGLMKKAFELSVMCDVEVGLIIFSQTGKLYEFAT 59
               68***********************************************86 PP
2K-box33.81.4e-1259953470
      K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70
               + R+llGe+++s+++ eL++Le+ L++sl +iRs++ 
  678301159 59 TSRKLLGEGIDSCNIDELHRLERLLDRSLHRIRSRQG 95
               67*********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.529161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-26361IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-28323IPR002100Transcription factor, MADS-box
CDDcd002651.70E-34360No hitNo description
PfamPF003196.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-95995IPR002487Transcription factor, K-box
SuperFamilySSF550081.17E-7162224IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:3.30.70.1001.9E-10164227No hitNo description
PfamPF004039.4E-8168222IPR006121Heavy metal-associated domain, HMA
CDDcd003711.13E-5171226No hitNo description
SuperFamilySSF550084.32E-8243314IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:3.30.70.1008.4E-12247311No hitNo description
PfamPF004031.2E-10252307IPR006121Heavy metal-associated domain, HMA
CDDcd003713.90E-6254310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030001Biological Processmetal ion transport
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVRGKVEMKK IENAASRQVT FTKRRNGLMK KAFELSVMCD VEVGLIIFSQ TGKLYEFATS  60
RKLLGEGIDS CNIDELHRLE RLLDRSLHRI RSRQGGEMII EHCTHIIFQV FLQLIVCWCG  120
QDMYENFCMA QCHGWGHHHA CTCDHGHRVE NVNDEMGIEA HEAILLSVSV HCQGCQDEIM  180
SALRGFHGVE VIEVDAKNHK VKVMGKKADP VKVERRLRKK TGKHVKLLYP LPKKEDKQPQ  240
EVQEVMEYVL EIRMHCEGCE KEVKHGILNM KGVQTVEIDG RKKNLVKVRG TIDPKRMVEL  300
VRKRLGRHAE ILKQGNEGSV GDGCGCCHHP PQVVYVPQFF SDENPNSCSV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A6e-16360259Myocyte-specific enhancer factor 2A
3mu6_B6e-16360259Myocyte-specific enhancer factor 2A
3mu6_C6e-16360259Myocyte-specific enhancer factor 2A
3mu6_D6e-16360259Myocyte-specific enhancer factor 2A
5f28_A1e-15160160MEF2C
5f28_B1e-15160160MEF2C
5f28_C1e-15160160MEF2C
5f28_D1e-15160160MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678301159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257645.15e-59PREDICTED: heavy metal-associated isoprenylated plant protein 8-like
TrEMBLA0A1J6HS541e-57A0A1J6HS54_NICAT; Heavy metal-associated isoprenylated plant protein 3
STRINGXP_009622924.11e-57(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.44e-28AGAMOUS-like 42