PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678301114
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 371aa    MW: 41452.8 Da    PI: 6.1822
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678301114genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-174592148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv+ ++++G g+W+++++  g+ R++k+c++rw +yl
        678301114 45 KGLWSPEEDEKLVNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 92
                     678*******************************************97 PP
2Myb_DNA-binding44.34.1e-1498141146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++ eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
        678301114  98 RGTFSLEEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 141
                      899*******************.*********.*********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-263795IPR009057Homeodomain-like
PROSITE profilePS5129425.3194096IPR017930Myb domain
SuperFamilySSF466891.17E-2943139IPR009057Homeodomain-like
SMARTSM007173.5E-144494IPR001005SANT/Myb domain
PfamPF002497.8E-164592IPR001005SANT/Myb domain
CDDcd001671.39E-124892No hitNo description
Gene3DG3DSA:1.10.10.606.4E-2596147IPR009057Homeodomain-like
PROSITE profilePS5129419.83497147IPR017930Myb domain
SMARTSM007175.5E-1397145IPR001005SANT/Myb domain
PfamPF002495.2E-1398141IPR001005SANT/Myb domain
CDDcd001671.61E-9100143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MNVNETLPQF IKLPPRFPPC LLFSISAASS FMGRHSCCFK QKLRKGLWSP EEDEKLVNHI  60
AKYGHGCWSS VPKLAGLERC GKSCRLRWIN YLRPDLKRGT FSLEEENLII ELHAVLGNRW  120
SQIAAQLPGR TDNEIKNLWN SSLKKKLRQR GIDPNTHQPL PEIEENPGAT AAAAAVPSSS  180
TSGGMEISVD ELKHMKHSVS VDDFPGLDTD ELLRLISPPA APAISSSELL SFNYSNPILN  240
PPFPSSTFVP PPLPRMPFNC DGGAWRTNIA TPFFTQTGAA APVPCSDIPT DMPWNGYLQN  300
QILSSNWTQN PATLYTQPKL ESNYEEEEEE DPWEWHHQQN QQISLQESEA IYGKHFPRIS  360
SASATTFGLF S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29431475108B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148LKKKLRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678301114
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022895690.13e-93LOW QUALITY PROTEIN: transcription factor MYB61-like
TrEMBLA0A162A6D81e-88A0A162A6D8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-74myb domain protein 61