PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678300923 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 214aa MW: 24430 Da PI: 10.1876 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5.1e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++++ +G g W++++ + g++R++k+c++rw++yl 678300923 10 KGAWTKEEDALLRKCIEIHGEGKWHLVPLRAGLNRCRKSCRLRWLNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 9.5e-16 | 63 | 107 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +T++E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++ 678300923 63 RSCFTEDEVDLLLRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNSH 107 6789******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.965 | 5 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.35E-28 | 7 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-15 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-21 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.30E-11 | 12 | 57 | No hit | No description |
SMART | SM00717 | 8.1E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.933 | 62 | 112 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.4E-14 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 65 | 112 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAKEVRGLRK GAWTKEEDAL LRKCIEIHGE GKWHLVPLRA GLNRCRKSCR LRWLNYLRPD 60 INRSCFTEDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV KNFWNSHVHK RLSTGDGSKT 120 CSYKTQKAVV IRPRAMRLSR AQEPRTPSNH MGVGTREAEA RAEVDRESLS WWSELLGMME 180 SGFEDRVGAY PRTPAGTSTE IDLGLFSSSM LEDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 8 | 114 | 5 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678300923 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100106.1 | 1e-65 | transcription factor MYB90-like | ||||
Swissprot | Q9FNV9 | 4e-56 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A1S3ZX05 | 2e-63 | A0A1S3ZX05_TOBAC; transcription factor MYB114-like | ||||
TrEMBL | C1JAC9 | 2e-63 | C1JAC9_TOBAC; Anthocyanin 2 | ||||
TrEMBL | C1JAD0 | 2e-63 | C1JAD0_NICTO; Anthocyanin 2 | ||||
STRING | XP_009605381.1 | 4e-64 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009627993.1 | 4e-64 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66380.1 | 7e-55 | myb domain protein 114 |
Publications ? help Back to Top | |||
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