PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678300695
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 292aa    MW: 32148.4 Da    PI: 8.3696
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678300695genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed ll ++v+ +G g W++++ + g++R++k+c++rw++yl
        678300695 10 KGAWSAAEDALLRKCVESYGEGKWHLVPLRAGLNRCRKSCRLRWLNYL 57
                     79********************************************97 PP
2Myb_DNA-binding44.73e-1466107447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++
        678300695  66 FSEDEVDLLIRLHKLLGNK-WTLIAGRLP-GRTANDVKNFWNSH 107
                      79*****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.385161IPR017930Myb domain
SuperFamilySSF466894.12E-277104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-19760IPR009057Homeodomain-like
SMARTSM007171.3E-13959IPR001005SANT/Myb domain
PfamPF002491.4E-141057IPR001005SANT/Myb domain
CDDcd001672.77E-101257No hitNo description
Gene3DG3DSA:1.10.10.609.6E-2161111IPR009057Homeodomain-like
PROSITE profilePS5129417.86762112IPR017930Myb domain
SMARTSM007171.8E-1262110IPR001005SANT/Myb domain
CDDcd001673.67E-1166108No hitNo description
PfamPF002493.3E-1366107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDKPFTGVRK GAWSAAEDAL LRKCVESYGE GKWHLVPLRA GLNRCRKSCR LRWLNYLRPN  60
INRAWFSEDE VDLLIRLHKL LGNKWTLIAG RLPGRTANDV KNFWNSHVHK KAATATDVST  120
TFLPKEKTGV VIKPKPLRVS ATQSARAPLD KGSLLGTSTN KNPNLSNRGE EANGFANGTP  180
TSFRLSEVLQ TATQEGKQPP CASLEKTPLL ESSCVAVNPS FPTSGDEVIK DGGGEGFYGS  240
PSSWWWPENA TAYDGCRNLN SLDFSEPLDP VPEAEAMTVD DVDLLHLLFQ VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-20101147110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678300695
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-56myb domain protein 113