PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678300674 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 287aa MW: 32574.1 Da PI: 7.6401 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.5 | 1.4e-31 | 73 | 123 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s 678300674 73 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 123 79***********************************************96 PP | |||||||
2 | K-box | 69.1 | 1.4e-23 | 141 | 224 | 12 | 95 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 ++ +s+++e+ kLk+++e Lq+ qR+llG+dL+sL+l++L+ +e+qLe+sl iRs++++l+++ + l +k +e+ + ++ + 678300674 141 STLQSSYKEYLKLKARYEALQQYQRQLLGDDLGSLNLNDLEAIEHQLESSLGLIRSTREKLMMDANNALERKLEEIYAASQMQQ 224 567999******************************************************************999887776655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 6.8E-30 | 65 | 130 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-41 | 65 | 124 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.207 | 65 | 125 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.96E-40 | 66 | 124 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 67 | 121 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-32 | 67 | 87 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-26 | 74 | 121 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-32 | 87 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-32 | 102 | 123 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.461 | 143 | 234 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 7.4E-18 | 144 | 218 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence Send to blast |
MWHGDQSASA HPSIHHHAHL PPREPQRFFK TTARGLKGAA VGVGEVDLWV ESKGKLQNYE 60 EIHIMGRGRV ELKRIENKIN RQVTFAKRRN GLLKKAYELS VLCDAEVALI IFSNRGKLYE 120 FCSSPEYYLL IPTFRVLDLA STLQSSYKEY LKLKARYEAL QQYQRQLLGD DLGSLNLNDL 180 EAIEHQLESS LGLIRSTREK LMMDANNALE RKLEEIYAAS QMQQQTWIAG QQCNAFGHQH 240 PHSQSFFQPL DCNSSLQIGC DDPVTSSQMT GASNSQTLNG LLPVWML |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 5e-18 | 66 | 124 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_B | 5e-18 | 66 | 124 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_C | 5e-18 | 66 | 124 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_D | 5e-18 | 66 | 124 | 1 | 59 | Myocyte-specific enhancer factor 2A |
5f28_A | 6e-18 | 65 | 124 | 1 | 60 | MEF2C |
5f28_B | 6e-18 | 65 | 124 | 1 | 60 | MEF2C |
5f28_C | 6e-18 | 65 | 124 | 1 | 60 | MEF2C |
5f28_D | 6e-18 | 65 | 124 | 1 | 60 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678300674 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099041.1 | 1e-110 | developmental protein SEPALLATA 1 isoform X2 | ||||
Swissprot | Q8LLR2 | 6e-86 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | S8EDZ4 | 1e-102 | S8EDZ4_9LAMI; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003483 | 6e-94 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02310.1 | 6e-68 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|