PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678299724
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 201aa    MW: 23051.5 Da    PI: 10.4089
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678299724genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+ +++q+G g+W++ +++ g+ R++k+c++rw +yl
        678299724 14 KGPWTREEDQKLLAYIEQHGQGSWRSLPAKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding53.17.5e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++t E++ +++++++lG++ W++Ia++++ +Rt++++k++w++
        678299724  67 RGKFSTHEEKTIIRLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNT 110
                      89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-25864IPR009057Homeodomain-like
PROSITE profilePS5129425.1965IPR017930Myb domain
SuperFamilySSF466899.38E-3012108IPR009057Homeodomain-like
SMARTSM007178.7E-141363IPR001005SANT/Myb domain
PfamPF002494.6E-161461IPR001005SANT/Myb domain
CDDcd001674.70E-111661No hitNo description
Gene3DG3DSA:1.10.10.607.5E-2665116IPR009057Homeodomain-like
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129418.60266116IPR017930Myb domain
PfamPF002492.2E-1567110IPR001005SANT/Myb domain
CDDcd001675.71E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MERPTSEANE ELKKGPWTRE EDQKLLAYIE QHGQGSWRSL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF STHEEKTIIR LHALLGNRWS AIAAHLPKRT DNEIKNYWNT RLKKRLTRMG  120
IDPVTHKPKN IPGGQSKQAA KLRHMAHDLS CVYGDPFCGV SSRRSSPIHA QLDVLPVAVG  180
EYQVKVGEFH DSLIRRSCLC Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29111164108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678299724
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847598.11e-87PREDICTED: myb-related protein 306-like
SwissprotQ9LE636e-77MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2G9H7056e-88A0A2G9H705_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.L01264.1.p6e-85(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.19e-79myb domain protein 106