PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678299059 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 256aa MW: 29193.6 Da PI: 7.6653 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.7 | 2.2e-19 | 78 | 131 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV +WFqNrRa++k 678299059 78 KKRRLDMEQVKTLERSFELGSKLDPERKTQLARDLGLQPRQVAIWFQNRRARWK 131 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.5 | 9.9e-40 | 77 | 167 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl eqvk+LE+sFe +kL+perK++lar+Lglqprqva+WFqnrRAR+ktkqlEk+y+ Lkr+++a ++en++L++++ +L++e+ 678299059 77 EKKRRLDMEQVKTLERSFELGSKLDPERKTQLARDLGLQPRQVAIWFQNRRARWKTKQLEKNYNLLKRQVEAARAENDALRAQNLKLHAEI 167 69*************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.313 | 73 | 133 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.47E-19 | 73 | 135 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.0E-19 | 76 | 137 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.8E-17 | 78 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.22E-16 | 78 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-19 | 80 | 140 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.0E-6 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.0E-6 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.7E-9 | 133 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGFFHPNFML QLQFSHDDAA AADIHRPSYI SPAPILPHGF LDGKRSSSMR YENGAGLYEE 60 TKRNSNGEDE LSDDGGEKKR RLDMEQVKTL ERSFELGSKL DPERKTQLAR DLGLQPRQVA 120 IWFQNRRARW KTKQLEKNYN LLKRQVEAAR AENDALRAQN LKLHAEILVL NNMGKTEMAN 180 PNRGTEESSS NRTENSSETK IEISRNPAIE SRLSAELYGS RIGQVVKEGS SSFYCSTFCG 240 VDEQGILWPW GEHRFT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678299059 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071017.1 | 8e-88 | homeobox-leucine zipper protein ATHB-13 | ||||
Swissprot | Q8LC03 | 3e-64 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A2G9GFL1 | 3e-85 | A0A2G9GFL1_9LAMI; Transcription factor HEX | ||||
STRING | VIT_01s0026g01950.t01 | 1e-81 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 2e-58 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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