PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678298603
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 284aa    MW: 32433.4 Da    PI: 10.2253
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678298603genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-1664109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 
        678298603  64 RGHWRPAEDAKLKELVAVYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 109
                      899*****************************.***********996 PP
2Myb_DNA-binding54.82.2e-17116159146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
        678298603 116 RRAFTDEEEERLMTAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 159
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.58259110IPR017930Myb domain
SMARTSM007175.8E-1463112IPR001005SANT/Myb domain
PfamPF002494.8E-1664109IPR001005SANT/Myb domain
SuperFamilySSF466896.74E-2864157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-2765117IPR009057Homeodomain-like
CDDcd001674.00E-1367108No hitNo description
PROSITE profilePS5129425.975111165IPR017930Myb domain
SMARTSM007177.8E-14115163IPR001005SANT/Myb domain
PfamPF002495.8E-14116158IPR001005SANT/Myb domain
CDDcd001673.45E-11118158No hitNo description
Gene3DG3DSA:1.10.10.601.8E-20118164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSFHQRNGNS SSSSSDSSSM VYKDFTFLSI NQQSIDLNSS LKNPEDHQRD GSNVQQQHIK  60
LCTRGHWRPA EDAKLKELVA VYGPQNWNLI AEKLQGRSGK SCRLRWFNQL DPRINRRAFT  120
DEEEERLMTA HRLYGNKWAM IARLFPGRTD NAVKNHWHVI MARRYREQSS ACRRRKMSQF  180
VYKAMEVEQQ HSEFQFAPPP HPQANFTAVG GGFWSPQRSL EVFPGARRRQ SSTAEVINIF  240
NNPSPYLLHF NFNPSPEKVS GGVESPAPTG SPPPFIDFLG VGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32631646107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678298603
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070989.17e-98transcriptional activator Myb
TrEMBLA0A2G9I2T93e-97A0A2G9I2T9_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.E00083.1.p4e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-75myb domain protein 105