PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678297159 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 27197.5 Da PI: 8.7585 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.7 | 2.3e-07 | 25 | 70 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT+eE +++ +a ++ + +W ++a ++ g++ ++ + ++ 678297159 25 TWTKEENKKFENALALVDEKhpnRWFLVADFIP-GKSVLDVMNQYRV 70 6*************8766666666*********.*********9986 PP | |||||||
2 | Myb_DNA-binding | 40.6 | 5.9e-13 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + +++G+g+W++I+r +t+ q+ s+ qky 678297159 122 PWTEDEHRRFLLGLEKHGKGDWRSISRNYVISKTPTQVASHAQKY 166 8*****************************789***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.867 | 21 | 76 | IPR017884 | SANT domain |
SMART | SM00717 | 6.6E-7 | 22 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.92E-10 | 24 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-6 | 25 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.42E-7 | 25 | 71 | No hit | No description |
PROSITE profile | PS51294 | 16.678 | 115 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-15 | 117 | 171 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-10 | 119 | 169 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-10 | 119 | 165 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-17 | 119 | 169 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.01E-8 | 122 | 166 | No hit | No description |
Pfam | PF00249 | 2.8E-11 | 122 | 166 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDMESLPSLL TNSGWPMWQS SSGTTWTKEE NKKFENALAL VDEKHPNRWF LVADFIPGKS 60 VLDVMNQYRV LAADVRDIEK GLFPIPGDLA SSFTLGATDN RSFHVYAKRA RAGDQERRKG 120 VPWTEDEHRR FLLGLEKHGK GDWRSISRNY VISKTPTQVA SHAQKYYLRR NSGNKDRKRP 180 SIHDITIVDE PRVSEIGSTS EGPSITTKIE MEWDQSAEGG IVVLNSTGYP NQLIAWSQGY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678297159 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076737.1 | 6e-91 | transcription factor DIVARICATA-like | ||||
Refseq | XP_011076738.1 | 6e-91 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 3e-65 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S3YFH9 | 1e-86 | A0A1S3YFH9_TOBAC; transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1U7W9M1 | 1e-86 | A0A1U7W9M1_NICSY; transcription factor DIVARICATA-like | ||||
STRING | XP_009776702.1 | 2e-87 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 7e-72 | MYB family protein |
Publications ? help Back to Top | |||
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