PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678296982 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 357aa MW: 39958.5 Da PI: 4.8928 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 138 | 188 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr+++ +g+W+AeIrdps+ r r +lg+++taeeAa +++a+ kl+g 678296982 138 SKFRGVRQRP-WGKWAAEIRDPSQ---RVRLWLGTYDTAEEAAMVYDNAAIKLRG 188 79********.**********965...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.99E-31 | 138 | 195 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-22 | 138 | 196 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-13 | 138 | 188 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-30 | 139 | 197 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-38 | 139 | 202 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.314 | 139 | 196 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 140 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 162 | 178 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MLLPRQLKQP SFGCFLHLGL DLIRRFSESM GTTLLPRGRF KEGSFSEGGL KPHRGEWGGI 60 GNAAVTVRFC VDDPDATDSS GDEDSEFRPR IKKYVNEIRI ESASSDCGQT RGGVPLGLKS 120 KPMKVKAEEM AGKRRNRSKF RGVRQRPWGK WAAEIRDPSQ RVRLWLGTYD TAEEAAMVYD 180 NAAIKLRGPG ALTNFKKTPA KDTWESSYDS AGESRNFSSP TSVFRYSSDL DSEPGVAGYT 240 VSSHFFEFPV EEEPTIRRKI PPTPGNQWEP EDGERAPQEY TPEEVPIFDF PVESVSEFYC 300 WELLLRNSLE AAEFGETGAA AVGDAKDSVE ERSRWLQVDD DFREVSNLGS LESFLAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 140 | 195 | 6 | 62 | ATERF1 |
3gcc_A | 2e-18 | 140 | 195 | 6 | 62 | ATERF1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678296982 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022859448.1 | 4e-58 | ethylene-responsive transcription factor CRF4-like | ||||
STRING | Solyc06g051840.1.1 | 3e-54 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-46 | cytokinin response factor 4 |