PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678296982
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 357aa    MW: 39958.5 Da    PI: 4.8928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678296982genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20138188155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+++GVr+++ +g+W+AeIrdps+   r r +lg+++taeeAa  +++a+ kl+g
  678296982 138 SKFRGVRQRP-WGKWAAEIRDPSQ---RVRLWLGTYDTAEEAAMVYDNAAIKLRG 188
                79********.**********965...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.99E-31138195No hitNo description
SuperFamilySSF541719.15E-22138196IPR016177DNA-binding domain
PfamPF008473.4E-13138188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-30139197IPR001471AP2/ERF domain
SMARTSM003802.0E-38139202IPR001471AP2/ERF domain
PROSITE profilePS5103223.314139196IPR001471AP2/ERF domain
PRINTSPR003674.0E-10140151IPR001471AP2/ERF domain
PRINTSPR003674.0E-10162178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MLLPRQLKQP SFGCFLHLGL DLIRRFSESM GTTLLPRGRF KEGSFSEGGL KPHRGEWGGI  60
GNAAVTVRFC VDDPDATDSS GDEDSEFRPR IKKYVNEIRI ESASSDCGQT RGGVPLGLKS  120
KPMKVKAEEM AGKRRNRSKF RGVRQRPWGK WAAEIRDPSQ RVRLWLGTYD TAEEAAMVYD  180
NAAIKLRGPG ALTNFKKTPA KDTWESSYDS AGESRNFSSP TSVFRYSSDL DSEPGVAGYT  240
VSSHFFEFPV EEEPTIRRKI PPTPGNQWEP EDGERAPQEY TPEEVPIFDF PVESVSEFYC  300
WELLLRNSLE AAEFGETGAA AVGDAKDSVE ERSRWLQVDD DFREVSNLGS LESFLAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18140195662ATERF1
3gcc_A2e-18140195662ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMap678296982
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022859448.14e-58ethylene-responsive transcription factor CRF4-like
STRINGSolyc06g051840.1.13e-54(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-46cytokinin response factor 4