PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678296954
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92945.7 Da    PI: 6.7736
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678296954genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.9e-191775357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  678296954 17 KYVRYTPEQVEALERVYAECPKPSSMKRQQLIRECpilgNIEPKQIKVWFQNRRCREKQ 75
               6789*****************************************************97 PP
2START1425.9e-451653712203
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s++ +g a+ra+g+v  +++  v+e+l+d+  W  +++  ++     +g  g+++l +++++
  678296954 165 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNTKGVAARACGLVSLEPM-KVAEVLKDRISWFVDCRCHDVASSMPTGngGTIELVYMQMY 263
                68999*********************************999*****************.9999999999*******9999999999999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l++ Rdf+ +Ry+ +l +g++v++++S++s +  p+   +  +vRae+ pSg+l++p+++g+s +++v+h+d ++++++++lr+l++s+ + ++k+
  678296954 264 APTTLASpRDFWLLRYTTSLDDGSLVVCERSLTSSTGGPTgplNGCFVRAEMMPSGFLVRPCEGGGSIIHIVDHIDFDASTVPEVLRPLYESSKILAQKM 363
                ***99988*******************************99988889***************************************************** PP

                HHHHTXXX CS
      START 196 wvatlqrq 203
                ++ +l+++
  678296954 364 TMVALRHL 371
                *9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6611276IPR001356Homeobox domain
SMARTSM003893.8E-161480IPR001356Homeobox domain
SuperFamilySSF466891.2E-161579IPR009057Homeodomain-like
CDDcd000868.72E-171777No hitNo description
PfamPF000461.8E-161775IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-181972IPR009057Homeodomain-like
CDDcd146861.38E-669108No hitNo description
Gene3DG3DSA:1.20.5.1700.00173122No hitNo description
PROSITE profilePS5084823.084155356IPR002913START domain
Gene3DG3DSA:3.30.530.203.4E-17163357IPR023393START-like domain
SMARTSM002346.1E-37164374IPR002913START domain
SuperFamilySSF559617.83E-32165373No hitNo description
PfamPF018521.2E-42165372IPR002913START domain
PfamPF086701.3E-47699843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MALSMHRESK HQAMDSKYVR YTPEQVEALE RVYAECPKPS SMKRQQLIRE CPILGNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQSVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYMRQQ  120
LHTVSTTTID TSCESVVISD QPQQQNPTPQ HPHRDANSPA GLLAIAEETL AEFLGKATGT  180
AVDWVQMIGM KPGPDSIGIV AVSRNTKGVA ARACGLVSLE PMKVAEVLKD RISWFVDCRC  240
HDVASSMPTG NGGTIELVYM QMYAPTTLAS PRDFWLLRYT TSLDDGSLVV CERSLTSSTG  300
GPTGPLNGCF VRAEMMPSGF LVRPCEGGGS IIHIVDHIDF DASTVPEVLR PLYESSKILA  360
QKMTMVALRH LRHIALETSG EMQRNGNRQP AVIRALSHRL CRGFNDAING FVDDGWAVIG  420
SDGVEDVTIA INSSLNRVLC SHYHNISMPA TVGGVLCARA SMLLQNVAPA LIVRFLREHR  480
SEWADYGIDV YCASSVKGSP YAIPCTKSGA FPSSQVVMPL VQQLEHEECL DVIRLGGHAF  540
SPEEISLSRD VYLLQLCSGL DELDSGSCSQ LVFAPMDESF GDEAPLLPSG FRVIPLEPKS  600
NGPAITRTLD LASALDVGQV GARPASQVDA SSQNLRSVLT IAFQFAFENQ YRDSVAAMAR  660
QYVRNIVGSV QRVAMAIATS PLGSHSVPKT LPGSPEAVTL TQWICRSYRM HMGAELLRGK  720
SLAGDAVVKQ LWRHSDAIMC CSMRMNASAV FTFANQAGLD MLETTLVALQ DIMLEKILDD  780
AGRKILHVEF PKIMQQGFGY LPAGVCMSSM GRPVSYEQAV AWKVLNDDDS DHCLAFMFMN  840
WSFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678296954
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096678.10.0homeobox-leucine zipper protein ATHB-14 isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLS8D0Z30.0S8D0Z3_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009612341.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]