PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678296432
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 545aa    MW: 58860.5 Da    PI: 6.3376
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678296432genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-154188148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed  l d+vk+ G g+W+++ ++ g+ R++k+c++rw ++l
        678296432 41 KGPWTSAEDAVLMDYVKKNGEGNWNAVQKHTGLARCGKSCRLRWANHL 88
                     79******************************************9986 PP
2Myb_DNA-binding23.81.1e-0794126135
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 
                      +g++T eE+++++++++++G++ W++ a++    +
        678296432  94 KGAFTLEEEKIIIELHAKMGNK-WARMAAHAS-EK 126
                      799*******************.*****9987.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.333692IPR017930Myb domain
SMARTSM007173.8E-114090IPR001005SANT/Myb domain
PfamPF002491.3E-134188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-234295IPR009057Homeodomain-like
SuperFamilySSF466898.59E-2442118IPR009057Homeodomain-like
CDDcd001672.82E-94388No hitNo description
PROSITE profilePS512948.45193174IPR017930Myb domain
SMARTSM007174.2E-993172IPR001005SANT/Myb domain
PfamPF002491.3E-694127IPR001005SANT/Myb domain
CDDcd001672.62E-696168No hitNo description
Gene3DG3DSA:1.10.10.603.5E-2096121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-20153172IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MGQNSASESE DGAYSANSPL SCNEGDSIGG KSSDNGMILK KGPWTSAEDA VLMDYVKKNG  60
EGNWNAVQKH TGLARCGKSC RLRWANHLRP NLKKGAFTLE EEKIIIELHA KMGNKWARMA  120
AHASEKSDSG FHKGGLFKLY FMEPSFICLK ILSLPGRTDN EIKNYWNTRI KRHQRAGLPI  180
YPPNLYLPAQ SKSHQPLSSP SNCSGDFACH DDTLLQFNGH TKSDAMSGLF SIFQQKPEYG  240
ISPRHSCDDV FLSPHGYTIA QGPDKPILGH ESSDASEPPL FGTTYGAINC HSQSFSMKFS  300
GDLSFDRDTH CVSSIFPSAS KHPIDAQKLE LPSLQYQETN LGFWDPKSKP SDAVTHSPVS  360
GGLSWNCPYS GSSGLLEDLI YGAKALSKPE SHSACWATSC DVSAGDATGD SALNACVTGK  420
VNFNPISTLD NAGGSVPNGR TPTSTMGSSL EDIIVHHLKS ETADERWTLV DEMKNGTHSL  480
DYSRPDTLLE SCGNLQNSLL PPENCPIGSS EASLGDDSKN RSSTSGLGSC PWNNMPAACQ  540
ISEIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26391725106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678296432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091869.11e-158transcription factor GAMYB
RefseqXP_011091870.11e-158transcription factor GAMYB
RefseqXP_011091873.11e-158transcription factor GAMYB
RefseqXP_020552724.11e-158transcription factor GAMYB
TrEMBLA0A059PRV51e-159A0A059PRV5_SALMI; MYB-related transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14059713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.33e-81myb domain protein 33