PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678294985 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GATA | ||||||||
Protein Properties | Length: 135aa MW: 14546.5 Da PI: 10.5791 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.4 | 4.8e-19 | 27 | 61 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++ 678294985 27 CVDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 61 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.716 | 21 | 57 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.9E-15 | 21 | 73 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.18E-13 | 24 | 61 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.1E-16 | 25 | 61 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.83E-11 | 26 | 61 | No hit | No description |
Pfam | PF00320 | 7.2E-17 | 27 | 61 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 27 | 52 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MDLSDKGSEC EEMSGSPDRV SSGTRTCVDC GTSKTPLWRG GPAGPKSLCN ACGIRSRKKR 60 RALMGTSKEV KKPKKSSSSS SSSGDSVLRN RDGLWSLTRD VAVRPRSNTN RRRKLGEEEQ 120 AAFLLMALSC GSVYA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678294985 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100810.1 | 6e-56 | GATA transcription factor 15-like | ||||
Swissprot | Q8LG10 | 1e-34 | GAT15_ARATH; GATA transcription factor 15 | ||||
Swissprot | Q9FJ10 | 7e-35 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A4D9A7J8 | 9e-56 | A0A4D9A7J8_SALSN; Uncharacterized protein | ||||
STRING | Migut.G00106.1.p | 2e-51 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1999 | 23 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 7e-33 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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