PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678294623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 254aa MW: 28262.4 Da PI: 6.6674 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.8 | 3e-18 | 9 | 58 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i++ ++ qvtfskRr+ ++ KA+E+ v Cd++va i fs++g++ ys+ 678294623 9 KIDDATKCQVTFSKRRTSLIRKAHEIAVCCDVDVAFIAFSPSGRITKYSN 58 79********************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.404 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.8E-20 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-16 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-19 | 3 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-18 | 9 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-16 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-16 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRKIEIEKI DDATKCQVTF SKRRTSLIRK AHEIAVCCDV DVAFIAFSPS GRITKYSNRK 60 RHALTSSGYS NKVRESLMHS LVEKGAGYHG RNQDQWRPDA HVYATNEDLH TSNLGCLEPY 120 DVHHQQSNAS ATFACNFQVP GSEAEFSPAP EPLPAIGNPI FLDTSPCGVA HFVDRGTRPR 180 DNADFSGAMS AISSTPNPQP RAHSQTEPLY LAKLACSTLW MSRAGDLSEW DTTFRDDNSL 240 WFDSSRNELN QVLE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678294623 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3785 | 12 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 6e-18 | AGAMOUS-like 66 |