PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678294531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 299aa MW: 33141.2 Da PI: 8.5936 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 90 | 140 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r +r +lg++ taeeAak +++a+ +l+g 678294531 90 KKFRGVRRRP-WGKWAAEIRDPL----RrTRLWLGTYETAEEAAKVYDRAAVQLRG 140 59********.**********73....45************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.78E-31 | 90 | 147 | No hit | No description |
SMART | SM00380 | 1.1E-35 | 91 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.012 | 91 | 148 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-12 | 91 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 91 | 148 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-30 | 91 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 92 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MSFPCGVRFS EHVTRTTAVS GFLRRTLRIS VTDQDATDSS SDEEGVSLKR RHVRRYVNEV 60 VVLKPEKGGG NFLRRANAGK QKKEAVDVDK KFRGVRRRPW GKWAAEIRDP LRRTRLWLGT 120 YETAEEAAKV YDRAAVQLRG PNALTNFSNL PTKALKTTSG EEDSQSSDKS PSSVLRCVTR 180 ENPPNSPSKK DIFADIGNPV LIPEQIDLTT GFLDDAFCLD DISNDDIVFG SNLVIGSGSP 240 LWPYDDYFKQ DICDVFGSDI KPGALELGIS KYPQENSTAQ TKIPSPTETQ KSHATLSKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-20 | 90 | 161 | 4 | 70 | ATERF1 |
3gcc_A | 6e-20 | 90 | 161 | 4 | 70 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678294531 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080873.1 | 3e-65 | ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | S8E638 | 5e-63 | S8E638_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.A00686.1.p | 2e-61 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 2e-42 | cytokinin response factor 2 |