PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678294088

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bZIP

Protein Properties

Length: 416aa MW: 46948.3 Da PI: 8.5639

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678294088	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	100	136	2	38
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 k+ k+ rr+++NReAAr+sR+RKka++++Le+ k L 678294088 100 KPEKVLRRLAQNREAARKSRLRKKAYVQQLETCNKRL 136 677999*************************865555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-8	98	148	No hit	No description
SMART	SM00338	3.5E-5	99	159	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-7	100	137	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.53E-6	105	142	No hit	No description
PROSITE pattern	PS00036	0	106	121	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.2E-26	215	289	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MAIVLVSYMV QSVGDPEFHA QESSRRRMKS GTTQFVPKGR ISFCDPLHQM AMWGDFKANA 60 YVDSSLPIIL DFEQKHSNQS EEASQGALSA SHKCDQGHKK PEKVLRRLAQ NREAARKSRL 120 RKKAYVQQLE TCNKRLMQLE QEVDQARQQG LYAGGSCDAA QIPAPGTTNQ SEYYYIPHRV 180 VWSTPHHSLP PRCRVDAAAF EDLYGRWLEK QNRLISELRN ALHSNTGDAE LRVHVDSALR 240 HYFDLFSMKA SAAKADAFYV MSGLWITLGE RFFFWIGGFR PSEILKMLVP HLEPMTDEQH 300 LDIFTLRQSC QQAEDALTKG MEKLQQNVAD TLISGQLGDG NNAHEATAAM EKLEALVRFV 360 VQADNLRQGT LQQISRILTI RQAARGLLVL GDYIQRLQGL SSVWSKRHSD ASSTGM

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MAIVLVSYMV QSVGDPEFHA QESSRRRMKS GTTQFVPKGR ISFCDPLHQM AMWGDFKANA  60
YVDSSLPIIL DFEQKHSNQS EEASQGALSA SHKCDQGHKK PEKVLRRLAQ NREAARKSRL  120
RKKAYVQQLE TCNKRLMQLE QEVDQARQQG LYAGGSCDAA QIPAPGTTNQ SEYYYIPHRV  180
VWSTPHHSLP PRCRVDAAAF EDLYGRWLEK QNRLISELRN ALHSNTGDAE LRVHVDSALR  240
HYFDLFSMKA SAAKADAFYV MSGLWITLGE RFFFWIGGFR PSEILKMLVP HLEPMTDEQH  300
LDIFTLRQSC QQAEDALTKG MEKLQQNVAD TLISGQLGDG NNAHEATAAM EKLEALVRFV  360
VQADNLRQGT LQQISRILTI RQAARGLLVL GDYIQRLQGL SSVWSKRHSD ASSTGM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678294088

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097616.1	1e-154	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X3
Swissprot	Q39237	1e-134	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2G9GCL2	1e-154	A0A2G9GCL2_9LAMI; Uncharacterized protein
STRING	XP_008234510.1	1e-144	(Prunus mume)
STRING	EMJ06605	1e-144	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-136	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]