PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678293911

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 142aa MW: 15837.1 Da PI: 5.8568

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678293911	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	36	2e-11	80	134	1	48
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLp 48 lp+G++F+Ptd+el+ e+L++kvegk+ ++++ +i+ +i++++P++Lp 678293911 80 LPAGVKFDPTDQELI-EHLEAKVEGKEskshplIDEFIpTIEGEdGICYTHPEKLP 134 799**********.99*****6665443333333666646*******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-11	67	137	IPR003441	NAC domain
PROSITE profile	PS51005	12.215	80	142	IPR003441	NAC domain
Pfam	PF02365	3.0E-4	81	114	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MSKSKSSCDL IDSRMEEHQL CGSKHCPGCG HKLDGKPVSS FLFFSTGKTR AHDSGRSWVF 60 VLAVEVVVIT MAWWKDWVGL PAGVKFDPTD QELIEHLEAK VEGKESKSHP LIDEFIPTIE 120 GEDGICYTHP EKLPGSYPVF VF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678293911

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027066061.1	6e-50	NAC domain-containing protein 75-like
Refseq	XP_027066062.1	6e-50	NAC domain-containing protein 75-like
Refseq	XP_027066063.1	6e-50	NAC domain-containing protein 75-like
Refseq	XP_027069993.1	6e-50	NAC domain-containing protein 75-like
Refseq	XP_027069994.1	6e-50	NAC domain-containing protein 75-like
Refseq	XP_027069995.1	6e-50	NAC domain-containing protein 75-like
Refseq	XP_027069996.1	6e-50	NAC domain-containing protein 75-like
Refseq	XP_027157140.1	2e-52	NAC domain-containing protein 75-like, partial
Refseq	XP_027176602.1	6e-50	NAC domain-containing protein 75
Swissprot	Q9M0F8	3e-44	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A068U3X8	5e-49	A0A068U3X8_COFCA; Uncharacterized protein
TrEMBL	A0A2Z7BSZ3	5e-49	A0A2Z7BSZ3_9LAMI; NAC domain-containing protein 8
STRING	Migut.K00558.1.p	5e-47	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4057	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-46	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]