PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678293760

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

CAMTA

Protein Properties

Length: 868aa MW: 98792.9 Da PI: 8.3769

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678293760	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	166.5	4.5e-52	31	147	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 +e ++rwl+++ei+aiL n++ +++ ++ t pksg+++L++rk++r+frkDGyswkkkkdgkt++E+he+LKvg+ e +++yYah+e+nptf rrcywl 678293760 31 EEaRTRWLRPNEIHAILCNHKFFTINVKPVTLPKSGTILLFDRKMFRNFRKDGYSWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGENNPTFVRRCYWL 130 4559********************************************************************************************** PP CG-1 102 Leeelekivlvhylevk 118 Le++l++ivlvhy+e++ 678293760 131 LEKSLDHIVLVHYRETQ 147 ************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	78.502	26	152	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.8E-76	29	147	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.7E-45	32	145	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	6.3E-8	320	407	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	5.2E-16	505	619	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	8.14E-16	505	615	No hit	No description
SuperFamily	SSF48403	1.16E-16	506	619	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.451	514	627	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.1E-6	529	618	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.072	556	588	IPR002110	Ankyrin repeat
SMART	SM00248	1.1E-4	556	585	IPR002110	Ankyrin repeat
SMART	SM00248	3900	595	626	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.72E-6	693	770	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.687	704	730	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	16	719	741	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.199	720	746	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	9.6E-4	742	764	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.676	743	767	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 868 aa Download sequence Send to blast
MEHNSGLIQL VGSEIHGFRS MADLDVRSIL EEARTRWLRP NEIHAILCNH KFFTINVKPV 60 TLPKSGTILL FDRKMFRNFR KDGYSWKKKK DGKTIKEAHE HLKVGNEERI HVYYAHGENN 120 PTFVRRCYWL LEKSLDHIVL VHYRETQESH GSPATPVNSY TNSGVSDPGS WNFSEEPDSA 180 EVQEHSERMI LEDHEQRLRE INTLEWDELL GTDVPQRLTP PQEGKTAGTE LPNAYQTANQ 240 GICEIAEGFH VKRGSITSGH LPSCRVEGLS TQDSFGRWIS NLIVDSPQSM DDRSPESSNE 300 SFNYPPGQNH DVSVLGQIFK ILDVSPAWAS ANEETKILVV VAVEEGHQLV RGLKLYLACG 360 SCIAPVEVVE AGVYRCILPP QSPGSKNLYL TVDGNKPISQ VLNFEYRGPV LSHAPALLED 420 EVDWAEYHLQ MRLARLLFSS SRAPSTYSNK TSETSLKEAR AFYRSTSSIS EGWLHLSRMI 480 EDARMSFAQA KTKLFELILQ SRLREWLLEK VVSGDKISER DEKGLGVIHL CTILGYAWAV 540 QPFSLSGLSM DYRDKFGWTA LHWAAFYGKE KMVAALLSAG AKPYLVTDPN SENPSGCTAS 600 DLASRNGYNG LAAYLAEKAL LAQLNDMTLA GNASDSVQTT ARSTIYFGNT SEEEMNMKES 660 LTAYRTAAEA ASRIQTAFRV RSLKIRTKQA ELHHPEMEAR NIVAALKIQH AYKNYEARKR 720 IAAAARIQHR FRTWKMRRDF LNMRRQAIRI QAHFRGYQVR KQYRKLVWSV GVLEKAILRW 780 RLKRKGFRGL QVQLDETIKD SYPTSDVEED FFKASRREAE DRVERSVARV QALIHSKEAQ 840 EEYRRVKREH TKATLECQEP QPPDHDII

Sequence ? help Back to Top

Protein Sequence Length: 868 aa Download sequence Send to blast

MEHNSGLIQL VGSEIHGFRS MADLDVRSIL EEARTRWLRP NEIHAILCNH KFFTINVKPV  60
TLPKSGTILL FDRKMFRNFR KDGYSWKKKK DGKTIKEAHE HLKVGNEERI HVYYAHGENN  120
PTFVRRCYWL LEKSLDHIVL VHYRETQESH GSPATPVNSY TNSGVSDPGS WNFSEEPDSA  180
EVQEHSERMI LEDHEQRLRE INTLEWDELL GTDVPQRLTP PQEGKTAGTE LPNAYQTANQ  240
GICEIAEGFH VKRGSITSGH LPSCRVEGLS TQDSFGRWIS NLIVDSPQSM DDRSPESSNE  300
SFNYPPGQNH DVSVLGQIFK ILDVSPAWAS ANEETKILVV VAVEEGHQLV RGLKLYLACG  360
SCIAPVEVVE AGVYRCILPP QSPGSKNLYL TVDGNKPISQ VLNFEYRGPV LSHAPALLED  420
EVDWAEYHLQ MRLARLLFSS SRAPSTYSNK TSETSLKEAR AFYRSTSSIS EGWLHLSRMI  480
EDARMSFAQA KTKLFELILQ SRLREWLLEK VVSGDKISER DEKGLGVIHL CTILGYAWAV  540
QPFSLSGLSM DYRDKFGWTA LHWAAFYGKE KMVAALLSAG AKPYLVTDPN SENPSGCTAS  600
DLASRNGYNG LAAYLAEKAL LAQLNDMTLA GNASDSVQTT ARSTIYFGNT SEEEMNMKES  660
LTAYRTAAEA ASRIQTAFRV RSLKIRTKQA ELHHPEMEAR NIVAALKIQH AYKNYEARKR  720
IAAAARIQHR FRTWKMRRDF LNMRRQAIRI QAHFRGYQVR KQYRKLVWSV GVLEKAILRW  780
RLKRKGFRGL QVQLDETIKD SYPTSDVEED FFKASRREAE DRVERSVARV QALIHSKEAQ  840
EEYRRVKREH TKATLECQEP QPPDHDII

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678293760

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100788.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Refseq	XP_011100789.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A022RYH3	0.0	A0A022RYH3_ERYGU; Uncharacterized protein
STRING	Migut.G00093.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]