PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678292470

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SBP

Protein Properties

Length: 980aa MW: 109093 Da PI: 8.263

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678292470	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	122.5	1.8e-38	154	231	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+++l ++k+yhrrhkvCevhska++vlv++++qrfCqqCsrfh l +fDe+krsCrrrLa+hn+rrrk+q+ 678292470 154 ICQVDDCTENLCTTKDYHRRHKVCEVHSKAKNVLVRKQMQRFCQQCSRFHPLLDFDEGKRSCRRRLAGHNKRRRKSQP 231 5**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.6E-30	147	216	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.487	152	229	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.09E-34	153	233	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.3E-28	155	228	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	6.13E-7	760	893	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.5E-5	773	903	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	8.879	837	907	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence Send to blast
MEGVSAQVAA PVVIHQKPAP VRHPLTKKRD LPLDSSGSVH ENSSGSWNTK CWSWDSTSFI 60 ASPLQTEGVK PGKGDHISAV LRRKFDLVCD SVKLKQSSNS SQGDHNQYDS LGDGDEPGKS 120 VSNDGLDPIE EPEQVLKPSK RVKMVSSGGS DHPICQVDDC TENLCTTKDY HRRHKVCEVH 180 SKAKNVLVRK QMQRFCQQCS RFHPLLDFDE GKRSCRRRLA GHNKRRRKSQ PEDGKVHGRV 240 PGSQPDYIDR GGDIINRLSV LTHGEGTAKR MIKFSRAPGE DQQVQVLSRL NSLPFQVSLP 300 PKRAHQKTME GIVQDGVVSE NQNQTPRNDS CPSTRDFMCV LASDPAAHSS SSFGIQSLPS 360 TGKFDLEKSK STCAEQVGFV SIQGSIRALD GPGGGRRNEN IALEMSDNLW LHMSRSSPED 420 TASRNFPSNR IITSCNSSDH SAEKSPASSP PLHDLFPLQA SRETCKDGVL SKCEDKILCM 480 QKDQKERTCL QLFGQSVQAT EDGSVQSSSC RAATCPSTSG SDQSPYSMNV DVKERSSRII 540 VKLFGKDPSC LPTSLRTQIY NWLSKSPSDM ESYIKPGCVI ISFYLSMPSS TWDRLEEKFS 600 DYVNSLVKDI DMDFWGHGRF LVSSGSVMVS LKDGYTAHTQ MDLASRKTAV LLYKTMVTMR 660 YTWMALRSAI QRAVLLVVVL LRGFSYFPII IADQAICHEL RFLESELHVE FENKGKLYDR 720 RKRVLHFLDE LGWLFQRKSS SCSSEIHENS LCRFKSLLIF CVEHDFCALM RALLDILLEV 780 TQEVEWETLM EDHLLIRAVK KQSFPMVNLL INYSVVSSSS GSQQLTYIFT PDAPGPGGAT 840 PLHLAACTSS SPDLVDALTN DPQEVGLRSW NSILDEKGHS PYAYAVIRNH HSYNALVARK 900 LAERNNDQVS VLIPKKLPSS CSKCTILAAG RYQIKPRPYA RSMLAIATVC ACVCIILRLH 960 PSLSQKSSPF AWENLDYLSS

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence Send to blast

MEGVSAQVAA PVVIHQKPAP VRHPLTKKRD LPLDSSGSVH ENSSGSWNTK CWSWDSTSFI  60
ASPLQTEGVK PGKGDHISAV LRRKFDLVCD SVKLKQSSNS SQGDHNQYDS LGDGDEPGKS  120
VSNDGLDPIE EPEQVLKPSK RVKMVSSGGS DHPICQVDDC TENLCTTKDY HRRHKVCEVH  180
SKAKNVLVRK QMQRFCQQCS RFHPLLDFDE GKRSCRRRLA GHNKRRRKSQ PEDGKVHGRV  240
PGSQPDYIDR GGDIINRLSV LTHGEGTAKR MIKFSRAPGE DQQVQVLSRL NSLPFQVSLP  300
PKRAHQKTME GIVQDGVVSE NQNQTPRNDS CPSTRDFMCV LASDPAAHSS SSFGIQSLPS  360
TGKFDLEKSK STCAEQVGFV SIQGSIRALD GPGGGRRNEN IALEMSDNLW LHMSRSSPED  420
TASRNFPSNR IITSCNSSDH SAEKSPASSP PLHDLFPLQA SRETCKDGVL SKCEDKILCM  480
QKDQKERTCL QLFGQSVQAT EDGSVQSSSC RAATCPSTSG SDQSPYSMNV DVKERSSRII  540
VKLFGKDPSC LPTSLRTQIY NWLSKSPSDM ESYIKPGCVI ISFYLSMPSS TWDRLEEKFS  600
DYVNSLVKDI DMDFWGHGRF LVSSGSVMVS LKDGYTAHTQ MDLASRKTAV LLYKTMVTMR  660
YTWMALRSAI QRAVLLVVVL LRGFSYFPII IADQAICHEL RFLESELHVE FENKGKLYDR  720
RKRVLHFLDE LGWLFQRKSS SCSSEIHENS LCRFKSLLIF CVEHDFCALM RALLDILLEV  780
TQEVEWETLM EDHLLIRAVK KQSFPMVNLL INYSVVSSSS GSQQLTYIFT PDAPGPGGAT  840
PLHLAACTSS SPDLVDALTN DPQEVGLRSW NSILDEKGHS PYAYAVIRNH HSYNALVARK  900
LAERNNDQVS VLIPKKLPSS CSKCTILAAG RYQIKPRPYA RSMLAIATVC ACVCIILRLH  960
PSLSQKSSPF AWENLDYLSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-29	146	228	2	84	squamosa promoter binding protein-like 4

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678292470

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083361.1	0.0	squamosa promoter-binding-like protein 14

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12887	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-177	squamosa promoter binding protein-like 14