PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678292187
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 519aa    MW: 56136.4 Da    PI: 7.5643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678292187genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-05119141123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  678292187 119 FVCEICNKGFQRDQNLQLHRRGH 141
                89*******************88 PP
2zf-C2H214.10.00014195217123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C  C+k +   s+Lk H +t+
  678292187 195 HRCDRCSKKYAVLSDLKAHVKTC 217
                79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-5118141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.31E-7118141No hitNo description
SMARTSM003550.017119141IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949119141IPR007087Zinc finger, C2H2
PfamPF121718.3E-5119141IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
SMARTSM00355200160190IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4183216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.31E-7190215No hitNo description
SMARTSM0035574195215IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MVGYPNPPSR LLFPAPITCS VPVSSLVLHI DFQAPPCSWC RIMEDDDEEE EGEAEVEESC  60
SREVLYSYCR PMDEAGKLGG ESKAPVVENK KKRSFSGMRD PDAEVIALSP KALLATNRFV  120
CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TSKDIRKRVY VCPEPTCVHH DPARALGDLT  180
GIKKHFCRKH GEKKHRCDRC SKKYAVLSDL KAHVKTCGTR EYRCDCGTLF SRKDSFITHR  240
AFCDALAQER TRSDPAGELN VHILRPPGTS SSSPLPPPPL TPPTDVLSPA PSVGSSELQG  300
NRSAAHFHSL TGSSVEVGVA PCSDGGVSEQ CGSFCVVGSP DISQSFNPPP CYPTLFRPIS  360
DSASLTLSPS LYGVLSSFPG APLNPRQHYM PNSPPVLSAT ALLQKAAQMG TTTSNPSVLH  420
VFSRPAPPPP TSDISAMAAA SVSTASKWNN VPSPFDESIF RQSPLFSGKG DYGTATLDFL  480
GVRMESSGGG FLSSINGASD LSGIGAWDDD SPERKPSIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-29191252364Zinc finger protein JACKDAW
5b3h_F6e-29191252364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678292187
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083713.11e-128protein indeterminate-domain 2-like isoform X1
RefseqXP_020551047.11e-128protein indeterminate-domain 1-like isoform X2
TrEMBLA0A2Z7AM571e-134A0A2Z7AM57_9LAMI; Zinc finger protein JACKDAW-like
STRINGGorai.009G203800.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2