PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678291937 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26850.8 Da PI: 9.9203 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.6 | 6.6e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+++nrqvtfskRr+g++KK +ELSvLCda++ +i+fss+gkl ey + 678291937 9 KRIESTTNRQVTFSKRRAGLMKKTHELSVLCDAQIGLIVFSSKGKLTEYTT 59 79***********************************************75 PP | |||||||
2 | K-box | 42.3 | 3.3e-15 | 90 | 165 | 12 | 89 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 +e+++qelak+kke+ nL+ ++ +++G dL s +++eL+++eqqL++s+ k+Rs+K l+ +q++++ + e ++++ 678291937 90 VAQERMHQELAKMKKETLNLELSLQRYKGYDLCSVQFEELNRIEQQLQHSVLKVRSRK--LMSNQLQNQAEVESQQHQ 165 45799****************************************************8..899999999988888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.188 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.56E-41 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-31 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-11 | 91 | 165 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.613 | 92 | 190 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGRGKIEVKR IESTTNRQVT FSKRRAGLMK KTHELSVLCD AQIGLIVFSS KGKLTEYTTP 60 PLSMKEIIDK YYKTRGLHFP DNNTAAGSAV AQERMHQELA KMKKETLNLE LSLQRYKGYD 120 LCSVQFEELN RIEQQLQHSV LKVRSRKLMS NQLQNQAEVE SQQHQGMTAV KLLDHQQEPL 180 LNQFLFSRED LQLGTLPLHP HSSHLQQTHP NLQGFGLGIR MPDFIPLSDN SKWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 2e-18 | 1 | 85 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 2e-18 | 1 | 85 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 2e-18 | 1 | 85 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 2e-18 | 1 | 85 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678291937 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843283.1 | 1e-83 | PREDICTED: MADS-box protein defh21 | ||||
Swissprot | Q8RVL4 | 3e-77 | DEF21_ANTMA; MADS-box protein defh21 | ||||
TrEMBL | A0A2G9GAS3 | 1e-93 | A0A2G9GAS3_9LAMI; MADS box transcription factor | ||||
STRING | Migut.C01064.1.p | 4e-83 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 2e-52 | MIKC_MADS family protein |