PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678291569 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 93aa MW: 10800.3 Da PI: 10.0098 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.6 | 2.9e-08 | 11 | 54 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W+ +++ a +++ ++ +W+ Iar++ g+++++++ ++ 678291569 11 SWSVMQNKQFEAALAKFDKEtpdRWHNIAREVA-GKSPEEVRRHY 54 7*****************99*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.6E-8 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.29E-11 | 10 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-5 | 11 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-5 | 11 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-5 | 18 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MASSSMSSSR SWSVMQNKQF EAALAKFDKE TPDRWHNIAR EVAGKSPEEV RRHYEALEKD 60 IMRIETDQVP IPNYHSLPKV GIEQRFVKGL RLK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-26 | 3 | 76 | 2 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678291569 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083673.1 | 4e-39 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 2e-28 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2G9H6D0 | 1e-34 | A0A2G9H6D0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N00487.1.p | 7e-35 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 6e-26 | RAD-like 6 |