PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678291558
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family TCP
Protein Properties Length: 377aa    MW: 41142.2 Da    PI: 6.3777
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678291558genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.93e-33491913129
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssasec.eaesssssasnsssg........... 88 
                g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a  +i el+     ++++++  ++e++s+s++ +++g           
  678291558  49 GGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAASSINELPPMsiLFPDSRKQlSEEKRSNSGGGDQHGfespevemddg 148
                78*************************************************************6623333223344444444444444455555444444 PP

        TCP  89 ........kaaksaakskksqksaasalnlakesr.............akarar.arertrek 129
                                       a + +      +             + +r+r  r+r +ek
  678291558 149 ddpsfsqhV--------------AMKSS------ScsaisetckgsglSLSRSRkTRDRVAEK 191
                333222221..............22111......11222223334334333333112233333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136932.02650108IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-3550192IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MMEEQYQEEE EEGENERGVD NGGGVDFTAM GRFYGWPSSR IVRVSRACGG KDRHSKVLTS  60
KGLRDRRVRL SVNTAIQFYD LQDRLGYDQP SKAVEWLLKA AASSINELPP MSILFPDSRK  120
QLSEEKRSNS GGGDQHGFES PEVEMDDGDD PSFSQHVAMK SSSCSAISET CKGSGLSLSR  180
SRKTRDRVAE KEKGNGSLNP ISQTTSFTEL LNAGITTHNG GESYFFMKSS PTPMDYFSSG  240
LLSPATARAS QVPSTGNHFP GFGVSPVAEH HQSELQHFSF APDNLVHAMN SGSHDYSMNG  300
SFSVSSSSGF AGFNRGTLQS NSSSPSMLPP IQRFPDGSPP SFFIGADDHN HQFLAGYEGR  360
QELCYSNKGN QKLRGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2455109155Putative transcription factor PCF6
5zkt_B6e-2455109155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678291558
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842244.11e-134PREDICTED: transcription factor TCP2-like isoform X1
RefseqXP_012842245.11e-134PREDICTED: transcription factor TCP2-like isoform X2
TrEMBLA0A022QZI81e-131A0A022QZI8_ERYGU; Uncharacterized protein
STRINGMigut.M00891.1.p1e-134(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-59TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2