PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678291558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 377aa MW: 41142.2 Da PI: 6.3777 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 106.9 | 3e-33 | 49 | 191 | 3 | 129 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssasec.eaesssssasnsssg........... 88 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a +i el+ ++++++ ++e++s+s++ +++g 678291558 49 GGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAASSINELPPMsiLFPDSRKQlSEEKRSNSGGGDQHGfespevemddg 148 78*************************************************************6623333223344444444444444455555444444 PP TCP 89 ........kaaksaakskksqksaasalnlakesr.............akarar.arertrek 129 a + + + + +r+r r+r +ek 678291558 149 ddpsfsqhV--------------AMKSS------ScsaisetckgsglSLSRSRkTRDRVAEK 191 333222221..............22111......11222223334334333333112233333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 32.026 | 50 | 108 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.0E-35 | 50 | 192 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 377 aa Download sequence Send to blast |
MMEEQYQEEE EEGENERGVD NGGGVDFTAM GRFYGWPSSR IVRVSRACGG KDRHSKVLTS 60 KGLRDRRVRL SVNTAIQFYD LQDRLGYDQP SKAVEWLLKA AASSINELPP MSILFPDSRK 120 QLSEEKRSNS GGGDQHGFES PEVEMDDGDD PSFSQHVAMK SSSCSAISET CKGSGLSLSR 180 SRKTRDRVAE KEKGNGSLNP ISQTTSFTEL LNAGITTHNG GESYFFMKSS PTPMDYFSSG 240 LLSPATARAS QVPSTGNHFP GFGVSPVAEH HQSELQHFSF APDNLVHAMN SGSHDYSMNG 300 SFSVSSSSGF AGFNRGTLQS NSSSPSMLPP IQRFPDGSPP SFFIGADDHN HQFLAGYEGR 360 QELCYSNKGN QKLRGKN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-24 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-24 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678291558 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842244.1 | 1e-134 | PREDICTED: transcription factor TCP2-like isoform X1 | ||||
Refseq | XP_012842245.1 | 1e-134 | PREDICTED: transcription factor TCP2-like isoform X2 | ||||
TrEMBL | A0A022QZI8 | 1e-131 | A0A022QZI8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.M00891.1.p | 1e-134 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2464 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18390.2 | 3e-59 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |