PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678291327
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 766aa    MW: 84305.8 Da    PI: 6.6744
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678291327genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.7e-21108163156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++eLe++F+++++p++++r eL+kkl+L++rqVk+WFqNrR+++k
  678291327 108 KKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSKKLSLDTRQVKFWFQNRRTQMK 163
                678899***********************************************999 PP
2START159.52.6e-502925151205
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ela++a++e++k+a+ +ep+W+ks     + +  + +l++f++  +     + +ea+++++ v+     lve+l+d+  +W   ++    + +t+evi++
  678291327 292 ELALAAMDEFMKLAQIDEPLWTKSLengrQVLCHEQYLRSFTPCIGmkhdsFVYEASKETVSVIISGSALVESLMDSD-KWRDVFPgivsRNTTTEVICN 390
                5899*********************8887778889999999888889**999**************************.********************* PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                g      g+l lm+a +q+lsplvp R++ f+R+++q+g+g+w+ivdvSvd  q+    + +  +++lpSg+li++++n +skvtwveh ++++ ++h l
  678291327 391 GaggtrnGVLLLMNATFQVLSPLVPvREVNFLRFCKQHGEGTWAIVDVSVDTIQESRGGPLLPNSRRLPSGCLIQEMPNSYSKVTWVEHSEYDETVIHHL 490
                *******************************************************988999999999********************************* PP

                HHHHHHHHHHHHHHHHHHHTXXXXX CS
      START 181 lrslvksglaegaktwvatlqrqce 205
                +r+++  ++ +ga +w  tl+rq e
  678291327 491 YRRVIAASIGFGAPRWAGTLRRQSE 515
                *********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-2294159IPR009057Homeodomain-like
SuperFamilySSF466897.27E-2194165IPR009057Homeodomain-like
PROSITE profilePS5007118.107105165IPR001356Homeobox domain
SMARTSM003891.4E-20106169IPR001356Homeobox domain
CDDcd000861.93E-19107165No hitNo description
PfamPF000467.9E-19108163IPR001356Homeobox domain
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
PROSITE profilePS5084838.35283519IPR002913START domain
SuperFamilySSF559616.73E-26286516No hitNo description
CDDcd088751.20E-98287515No hitNo description
PfamPF018527.6E-42292515IPR002913START domain
SMARTSM002343.4E-33292516IPR002913START domain
SuperFamilySSF559612.75E-20535732No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MNFGDFVDSI SYSSSSNSTA PPAGSMPTGG MSQPRLVFQP LSTALHVPGL SLALDADFSA  60
RAGDEYEISN AGGRNIRDEE NESRSASENM DGVSGDDRDG ISDKSRRKKR YHRHTPQQIQ  120
ELEAVFKECP HPDEKQRLEL SKKLSLDTRQ VKFWFQNRRT QMKTQIERHQ NSLLRQENDE  180
LRAENMSIRE AIANPICTNC GGAAIIGEMS MEEQHLRIQN TRLRSELERV CSLAGKILNR  240
SPANSSLELS GVASTLPLIP SELGLLSQLV TKKAAMNMVP IDRSVEKTVY LELALAAMDE  300
FMKLAQIDEP LWTKSLENGR QVLCHEQYLR SFTPCIGMKH DSFVYEASKE TVSVIISGSA  360
LVESLMDSDK WRDVFPGIVS RNTTTEVICN GAGGTRNGVL LLMNATFQVL SPLVPVREVN  420
FLRFCKQHGE GTWAIVDVSV DTIQESRGGP LLPNSRRLPS GCLIQEMPNS YSKVTWVEHS  480
EYDETVIHHL YRRVIAASIG FGAPRWAGTL RRQSESLTMS SATPPTDHTA ITAGGRKSML  540
KLAERMSNSF CDGICASSSP KWSKLKMENV DSNIQVMTRK SVEDPGVPPG IVLSAASSVW  600
VPVAPQRLFD FLRNERLRSE WDILSNGSPV QEMARIAKGQ HQGNCVSLLR VTAGTPNSNQ  660
SSMLILQETR IDPAEFLVVY APVDIPAMHV VMNGGDSAYV ALLPSGFAIL PDAGTEKPNG  720
SLLTIGFQIL INSQPTATLT VESVQTVSNL ISCTVQKIKS ALRSEN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678291327
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093167.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A2G9HWV60.0A0A2G9HWV6_9LAMI; Transcription factor DLX
STRINGXP_009602856.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]