PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678290589
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 470aa    MW: 53292.1 Da    PI: 4.6371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678290589genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.9e-14246289755
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                ++ErrRR+++N+++ +Lr l+P+ +      Kl+ a+iL  A++YI++Lq
  678290589 246 QAERRRRKKLNDKLYKLRALVPNiS------KLDRASILGDAIDYINELQ 289
                68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.399239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.60E-14241293No hitNo description
SuperFamilySSF474591.44E-17243303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-16245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11245289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-17246302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.696374446IPR002912ACT domain
CDDcd021160.00432375408No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDCCCAGSES NEEIAVSCFQ SSSSSSAPCR DFMFPHPQIP SCDLLNQLPC SVSLVDSGQE  60
TSGTRVLIPL PLGLVELFTT KAVPENDQVI KMVRAECNYF LEQMSSSSAT TDSFPSEQHP  120
LGLFQQQISM DSFDLPRDIS AERIHLSNPQ LNLQNFSSNV FDTSHLNGGA IFMEEGKAYS  180
NSFDNGFHHA EAAMNNNIMS TSPNWMQDQV NDGSFICENN RMDGSDDEEE TKYRKRTGKG  240
QAKNLQAERR RRKKLNDKLY KLRALVPNIS KLDRASILGD AIDYINELQK QEKELQMELE  300
ENSDNEDVQQ ISVQQQNTER WSLNRENENM LDGFRRNYKE NMSTQNHDID HINDKVQQME  360
PQVEVFQLDG KEFFLKVFCE HKPGAFLRLL EALSSLGLEV TNVNVSRHTC LVSSTFKVER  420
KSNDTVGADH VKESLLELTR HPSRMWLTEG DEADNGSDMG NNYTIDHHFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12244298963Transcription factor MYC2
5gnj_B1e-12244298963Transcription factor MYC2
5gnj_E1e-12244298963Transcription factor MYC2
5gnj_F1e-12244298963Transcription factor MYC2
5gnj_G1e-12244298963Transcription factor MYC2
5gnj_I1e-12244298963Transcription factor MYC2
5gnj_M1e-12244298963Transcription factor MYC2
5gnj_N1e-12244298963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233253RKRTGKGQAKNLQAERRRRKK
2247254ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678290589
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085914.11e-166transcription factor ABORTED MICROSPORES
TrEMBLA0A2G9H9751e-141A0A2G9H975_9LAMI; Uncharacterized protein
STRINGXP_009616536.11e-118(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-77bHLH family protein